JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LBP_chr20_38341482_38382013	0/0	a0019	481	1	0	1	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0020	481	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0021	481	1	0	0	0	0	1	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	a0022	481	1	1	0	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBR_chr1_225396502_225433038	0/0	a0001	615	234	36	50	112	10	26	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	1/1	a0002	615	86	50	16	10	0	8	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	a0003	615	4	0	0	4	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	a0004	615	4	0	0	3	0	1	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	a0005	615	3	3	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	a0006	615	2	0	0	2	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	a0007	615	1	1	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	a0008	615	1	0	0	1	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	a0009	615	1	0	0	0	0	1	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	a0010	615	1	1	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	a0011	615	1	1	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBX1_chr10_101221994_101234463	1/1	a0001	281	431	94	80	197	14	44	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	a0002	281	1	0	0	1	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX2_chr2_74492517_74504603	1/0	a0001	198	225	85	58	38	14	29	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/1	a0002	198	124	7	21	82	2	11	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	a0003	198	5	5	0	0	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	a0004	198	2	0	1	1	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	a0005	198	1	0	0	1	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	a0006	198	1	1	0	0	0	0	copy fasta	LBX2	chr2	74492517	74504603
LCA5L_chr21_39400728_39450778	1/0	a0001	670	254	33	48	134	11	27	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/1	a0002	670	76	50	14	5	3	3	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	a0003	670	3	1	2	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	a0004	670	2	0	2	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	a0005	670	2	2	0	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	a0006	670	2	2	0	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	a0007	670	1	0	0	1	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5_chr6_79479991_79542430	0/1	a0001	697	202	34	34	97	7	29	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0002	697	73	11	12	43	1	6	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0003	697	69	29	8	28	2	2	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	1/0	a0004	697	33	7	12	5	4	4	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0005	697	11	11	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0006	697	5	0	0	4	0	1	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0007	697	2	2	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0008	697	1	1	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0009	697	1	0	0	0	0	1	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0010	314	1	0	0	1	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0011	697	1	1	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	a0012	697	1	0	0	0	0	1	copy fasta	LCA5	chr6	79479991	79542430
LCAT_chr16_67934750_67949120	1/1	a0001	440	296	90	58	102	6	38	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	a0002	440	3	3	0	0	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	a0003	440	3	1	2	0	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	a0004	440	1	0	0	1	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCAT_chr16_67934750_67949120	0/0	a0005	440	1	0	0	1	0	0	copy fasta	LCAT	chr16	67934750	67949120
LCE1A_chr1_152822473_152833097	0/0	a0000	0	1	0	0	1	0	0	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	1/0	a0001	110	412	90	76	189	12	44	copy fasta	LCE1A	chr1	152822473	152833097
LCE1A_chr1_152822473_152833097	0/1	a0002	110	1	0	0	0	0	0	copy fasta	LCE1A	chr1	152822473	152833097