JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LCN2_chr9_128144453_128158453	0/0	a0002	198	2	2	0	0	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	a0003	198	2	2	0	0	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	a0004	198	1	0	0	1	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	a0005	198	1	1	0	0	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	a0006	198	1	1	0	0	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN6_chr9_136739017_136753525	1/1	a0001	163	371	85	78	143	15	48	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	a0002	163	13	13	0	0	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	a0003	163	5	0	0	4	1	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	a0004	163	3	0	0	3	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	a0005	163	2	0	1	1	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	a0006	163	1	0	0	1	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	a0007	163	1	0	1	0	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN8_chr9_136749386_136763243	1/1	a0001	152	317	80	56	121	17	41	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	a0002	152	47	11	14	18	1	3	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	a0003	152	3	3	0	0	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	a0004	152	1	0	0	1	0	0	copy fasta	LCN8	chr9	136749386	136763243
LCN9_chr9_135658309_135671961	1/1	a0001	157	411	87	76	182	16	48	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	a0002	157	3	3	0	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	a0003	157	3	1	0	2	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	a0004	157	2	1	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	a0005	157	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	a0006	157	1	0	1	0	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	a0007	157	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	a0008	157	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCN9_chr9_135658309_135671961	0/0	a0009	157	1	0	0	1	0	0	copy fasta	LCN9	chr9	135658309	135671961
LCNL1_chr9_136977993_136990758	0/0	a0000	0	11	9	2	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	1/1	a0001	164	280	65	46	121	10	36	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	a0002	164	88	17	22	33	4	12	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	a0003	164	1	1	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	a0004	164	1	1	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCNL1_chr9_136977993_136990758	0/0	a0005	164	1	1	0	0	0	0	copy fasta	LCNL1	chr9	136977993	136990758
LCORL_chr4_17836187_18026755	1/1	a0001	1871	142	36	25	60	1	18	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0002	1870	78	17	17	37	1	6	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0003	1871	18	0	0	12	0	6	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0004	1871	14	14	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0005	1871	6	6	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0006	1871	5	3	1	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0007	1871	3	1	2	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0008	1871	3	0	2	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0009	1871	3	0	0	3	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0010	1871	2	0	0	0	0	2	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0011	1871	2	0	1	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0012	1871	2	0	0	0	2	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0013	1870	2	0	2	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0014	1871	2	2	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0015	1871	2	0	2	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0016	1871	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0017	1871	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0018	1871	1	0	0	1	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0019	1871	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755