JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LCORL_chr4_17836187_18026755	0/0	a0020	1870	1	0	0	0	0	1	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0021	1871	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0022	1871	1	0	0	1	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCORL_chr4_17836187_18026755	0/0	a0023	1871	1	1	0	0	0	0	copy fasta	LCORL	chr4	17836187	18026755
LCOR_chr10_96827298_97000956	1/1	a0001	1557	157	41	32	61	3	18	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0002	1557	58	11	5	34	1	7	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0003	1557	33	0	2	27	0	4	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0004	1557	12	11	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0005	1557	5	5	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0006	1557	4	2	2	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0007	1557	3	3	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0008	1557	3	0	1	0	0	2	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0009	1557	3	0	0	3	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0010	1557	3	0	0	3	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0011	1557	2	0	0	2	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0012	1557	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0013	1160	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0014	1557	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0015	1557	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	a0016	1557	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCP1_chr13_46120923_46187177	0/1	a0001	627	333	62	66	151	13	40	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	1/0	a0002	627	44	20	12	10	1	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	a0003	627	1	1	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	a0004	627	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	a0005	627	1	1	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	a0006	627	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	a0007	627	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP2_chr5_170241233_170302777	1/1	a0001	533	379	94	78	145	18	42	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	a0002	533	2	0	2	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	a0003	533	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	a0004	533	1	0	0	1	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	a0005	533	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCTL_chr15_66542532_66570998	1/1	a0001	567	383	88	65	169	15	44	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	a0002	567	40	4	10	23	1	2	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	a0003	567	4	0	0	4	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	a0004	567	3	1	2	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	a0005	567	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	a0006	567	1	0	1	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	a0007	567	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	a0008	567	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCT_chr2_135782850_135842184	0/0	a0001	1927	127	15	27	66	3	16	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/1	a0002	1927	97	16	19	45	0	16	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0003	1927	91	15	18	48	3	7	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0004	1927	16	11	2	3	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0005	1927	10	10	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0006	1927	5	3	2	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0007	1927	4	4	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0008	1927	3	3	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	1/0	a0009	1927	3	2	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	a0010	1927	2	2	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184