JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LIAT1_chr17_405325_419666	0/0	a0030	413	1	0	0	0	1	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0031	413	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0032	277	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0033	433	1	0	0	0	0	1	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0034	267	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0035	433	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0036	423	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0037	413	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0038	413	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0039	289	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0040	423	1	1	0	0	0	0	copy fasta	LIAT1	chr17	405325	419666
LIAT1_chr17_405325_419666	0/0	a0041	413	1	0	0	1	0	0	copy fasta	LIAT1	chr17	405325	419666
LIFR_chr5_38469668_38561646	1/0	a0001	1097	257	62	47	111	12	24	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0002	1097	48	1	1	46	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/1	a0003	1097	37	10	16	2	0	8	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0004	1097	10	1	3	6	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0005	1097	4	0	0	0	0	4	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0006	1097	3	0	0	3	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0007	1097	3	3	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0008	1097	3	0	1	0	0	2	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0009	1097	2	2	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0010	1097	2	0	0	0	0	2	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0011	1097	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0012	596	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0013	1097	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0014	1097	1	1	0	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIFR_chr5_38469668_38561646	0/0	a0015	1097	1	0	1	0	0	0	copy fasta	LIFR	chr5	38469668	38561646
LIF_chr22_30235453_30251759	1/1	a0001	202	420	92	78	186	18	44	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	a0002	202	5	5	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	a0003	202	1	1	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIG1_chr19_48110445_48175344	0/0	a0000	0	1	0	0	1	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	1/1	a0001	919	310	78	56	130	9	35	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0002	919	4	4	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0003	919	4	3	1	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0004	919	2	0	0	0	1	1	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0005	919	1	0	0	0	0	1	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0006	919	1	0	0	0	0	1	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0007	919	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0008	919	1	0	0	1	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0009	919	1	0	1	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0010	919	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0011	919	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0012	919	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	a0013	919	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG3_chr17_34975512_35014743	1/1	a0001	1009	406	87	78	183	12	44	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	a0002	1009	9	9	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	a0003	1009	3	0	0	3	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	a0004	1009	2	0	0	2	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	a0005	1009	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	a0006	1009	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743