JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LITAFD_chr16_8877351_8890350	1/0	a0002	72	14	13	0	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	a0003	72	3	3	0	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	a0004	72	1	1	0	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	a0005	58	1	0	0	0	0	1	copy fasta	LITAFD	chr16	8877351	8890350
LITAFD_chr16_8877351_8890350	0/0	a0006	72	1	1	0	0	0	0	copy fasta	LITAFD	chr16	8877351	8890350
LITAF_chr16_11542722_11591919	1/0	a0001	161	377	90	62	168	13	43	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/1	a0002	161	34	5	6	14	3	5	copy fasta	LITAF	chr16	11542722	11591919
LITAF_chr16_11542722_11591919	0/0	a0003	161	1	1	0	0	0	0	copy fasta	LITAF	chr16	11542722	11591919
LIX1L_chr1_145928423_145963017	1/1	a0001	337	313	89	63	121	6	32	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	a0002	337	1	0	1	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	a0003	337	1	0	0	1	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1L_chr1_145928423_145963017	0/0	a0004	337	1	1	0	0	0	0	copy fasta	LIX1L	chr1	145928423	145963017
LIX1_chr5_97086867_97147611	1/1	a0001	282	354	86	68	146	16	36	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	a0002	282	1	0	0	1	0	0	copy fasta	LIX1	chr5	97086867	97147611
LIX1_chr5_97086867_97147611	0/0	a0003	282	1	0	0	1	0	0	copy fasta	LIX1	chr5	97086867	97147611
LKAAEAR1_chr20_64078376_64089398	1/1	a0001	194	80	13	17	22	0	26	copy fasta	LKAAEAR1	chr20	64078376	64089398
LKAAEAR1_chr20_64078376_64089398	0/0	a0002	194	20	6	1	10	0	3	copy fasta	LKAAEAR1	chr20	64078376	64089398
LKAAEAR1_chr20_64078376_64089398	0/0	a0003	194	1	1	0	0	0	0	copy fasta	LKAAEAR1	chr20	64078376	64089398
LKAAEAR1_chr20_64078376_64089398	0/0	a0004	194	1	0	0	0	0	1	copy fasta	LKAAEAR1	chr20	64078376	64089398
LLCFC1_chr7_142934484_142945868	0/1	a0001	122	272	95	60	70	12	34	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	a0002	122	3	2	1	0	0	0	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	a0003	122	1	0	1	0	0	0	copy fasta	LLCFC1	chr7	142934484	142945868
LLCFC1_chr7_142934484_142945868	0/0	a0004	122	1	1	0	0	0	0	copy fasta	LLCFC1	chr7	142934484	142945868
LLGL1_chr17_18220635_18249875	0/1	a0001	1064	320	65	54	157	8	35	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	1/0	a0002	1064	99	18	17	50	2	11	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0003	1064	5	5	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0004	1064	5	2	3	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0005	1064	3	2	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0006	1064	2	0	2	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0007	1064	1	0	0	1	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0008	1064	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0009	1064	1	0	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0010	1064	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0011	1064	1	0	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0012	1064	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0013	1064	1	0	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0014	1064	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0015	1064	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	a0016	1064	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL2_chr17_75520697_75580209	0/0	a0001	1020	123	6	22	67	7	21	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/1	a0002	1020	97	38	23	19	6	10	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	1/0	a0003	1020	74	4	18	44	2	5	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0004	1020	36	16	4	13	0	3	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0005	1020	6	0	6	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0006	1020	6	2	1	3	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0007	1020	4	0	0	4	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0008	1020	3	3	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0009	1020	3	3	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0010	1020	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	a0011	1020	2	1	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209