Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

Item	Value
geneid	198437
ensemblid	ENSG00000171695.11
hgncid	33718
symbol	LKAAEAR1
name	LKAAEAR motif containing 1
refseq_nuc	NM_001353425.2
refseq_prot	NP_001340354.1
ensembl_nuc	ENST00000302096.5
ensembl_prot	ENSP00000302763.4
mane_status	MANE Select
chr	chr20
start	64083376
end	64084398
strand	-
ver	v1.2
region	chr20:64083376-64084398
region5000	chr20:64078376-64089398
regionname0	LKAAEAR1_chr20_64083376_64084398
regionname5000	LKAAEAR1_chr20_64078376_64089398

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	194	80	13	17	22	26	17	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	MPPPA others(189): Show MPPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQG LAAMLPAQRHRHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSL ELPAERQNRLLGVLKAAEARGRVRALRLRYTRMRAEEIALLIQRQKSARA AIRLELFLPPQLKPARIPDPLDRQERRRVETILEENVDGTIFPR	chr20	64078376	64089398
a0002	0/0	194	20	6	1	10	3	9	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	MPPPA others(189): Show MPPPAKEGWRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQG LAAMLPAQRHRHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSL ELPAERQNRLLGVLKAAEARGRVRALRLRYTRMRAEEIALLIQRQKSARA AIRLELFLPPQLKPARIPDPLDRQERRRVETILEENVDGTIFPR	chr20	64078376	64089398
a0003	0/0	194	1	1	0	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	MPPPA others(189): Show MPPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQG LAAMLPAQRHRHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSL ELPAERQNRLLGVLKAAEARGRDRALRLRYTRMRAEEIALLIQRQKSARA AIRLELFLPPQLKPARIPDPLDRQERRRVETILEENVDGTIFPR	chr20	64078376	64089398
a0004	0/0	194	1	0	0	0	1	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	MPPPA others(189): Show MPPPAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQG LAAMLPAQRHRHLLFGDLLEDVGAAASTFPCGSVEPGYRMPDPRPWTQSL ELPAERQNRLLGVLKAAEARGRVRALRLRYTRMRAEEIALLIQRQKSARA AIRLELFLPLQLKPARIPDPLDRQERRRVETILEENVDGTIFPR	chr20	64078376	64089398

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	582	79	12	17	22	26	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	ATGCC others(577): Show ATGCCGCCGCCAGCGAAGGAGGGCGGGCGCAAGGGCCCGCGGGAGCGAAG CGGGAAGAGCGCGCCAGGCACGGCGCAGGGTGAGGAGCGTGCCAAGGGGG CGCCCGCGACAGAGCCCCCCAAGCCGGGCTGGGCCCTGACGCCGCAGGGA CTGGCGGCCATGCTCCCTGCGCAGCGCCACCGCCATCTGCTCTTCGGCGA CCTGCTGGAGGACGTGGGCGCGGCGGCCTCCACCTTCCCGTGCGGGTCGG TGGAACCGGGGTACCGCATGCCCGACCCGCGCCCGTGGACGCAGTCGCTC GAGCTGCCCGCCGAGCGCCAGAACCGGCTCCTCGGCGTCCTCAAGGCAGC GGAGGCCCGCGGGCGAGTCCGCGCCCTGCGGCTGCGCTACACCCGCATGC GGGCCGAGGAGATCGCGCTGCTCATCCAGCGGCAGAAGTCCGCGCGCGCC GCCATCCGGCTGGAGCTGTTCCTGCCGCCGCAGCTGAAGCCCGCGCGGAT CCCGGACCCCCTGGACCGCCAAGAGCGGAGGCGCGTGGAGACCATCCTGG AGGAGAACGTGGATGGCACCATCTTCCCGCGG	chr20	64078376	64089398
a0001c0003	0/0	582	1	1	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	ATGCC others(577): Show ATGCCGCCGCCAGCGAAGGAGGGCGGGCGCAAGGGCCCGCGGGAGCGAAG CGGGAAGAGCGCGCCAGGCACGGCGCAGGGTGAGGAGCGTGCCAAGGGGG CGCCCGCGACAGAGCCCCCCAAGCCGGGCTGGGCCCTGACGCCGCAGGGA CTGGCGGCCATGCTCCCTGCGCAGCGACACCGCCATCTGCTCTTCGGCGA CCTGCTGGAGGACGTGGGCGCGGCGGCCTCCACCTTCCCGTGCGGGTCGG TGGAACCGGGGTACCGCATGCCCGACCCGCGCCCGTGGACGCAGTCGCTC GAGCTGCCCGCCGAGCGCCAGAACCGGCTCCTCGGCGTCCTCAAGGCAGC GGAGGCCCGCGGGCGAGTCCGCGCCCTGCGGCTGCGCTACACCCGCATGC GGGCCGAGGAGATCGCGCTGCTCATCCAGCGGCAGAAGTCCGCGCGCGCC GCCATCCGGCTGGAGCTGTTCCTGCCGCCGCAGCTGAAGCCCGCGCGGAT CCCGGACCCCCTGGACCGCCAAGAGCGGAGGCGCGTGGAGACCATCCTGG AGGAGAACGTGGATGGCACCATCTTCCCGCGG	chr20	64078376	64089398
a0002c0002	0/0	582	20	6	1	10	3	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	ATGCC others(577): Show ATGCCGCCGCCAGCGAAGGAGGGCTGGCGCAAGGGCCCGCGGGAGCGAAG CGGGAAGAGCGCGCCAGGCACGGCGCAGGGTGAGGAGCGTGCCAAGGGGG CGCCCGCGACAGAGCCCCCCAAGCCGGGCTGGGCCCTGACGCCGCAGGGA CTGGCGGCCATGCTCCCTGCGCAGCGCCACCGCCATCTGCTCTTCGGCGA CCTGCTGGAGGACGTGGGCGCGGCGGCCTCCACCTTCCCGTGCGGGTCGG TGGAACCGGGGTACCGCATGCCCGACCCGCGCCCGTGGACGCAGTCGCTC GAGCTGCCCGCCGAGCGCCAGAACCGGCTCCTCGGCGTCCTCAAGGCAGC GGAGGCCCGCGGGCGAGTCCGCGCCCTGCGGCTGCGCTACACCCGCATGC GGGCCGAGGAGATCGCGCTGCTCATCCAGCGGCAGAAGTCCGCGCGCGCC GCCATCCGGCTGGAGCTGTTCCTGCCGCCGCAGCTGAAGCCCGCGCGGAT CCCGGACCCCCTGGACCGCCAAGAGCGGAGGCGCGTGGAGACCATCCTGG AGGAGAACGTGGATGGCACCATCTTCCCGCGG	chr20	64078376	64089398
a0003c0004	0/0	582	1	1	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	ATGCC others(577): Show ATGCCGCCGCCAGCGAAGGAGGGCGGGCGCAAGGGCCCGCGGGAGCGAAG CGGGAAGAGCGCGCCAGGCACGGCGCAGGGTGAGGAGCGTGCCAAGGGGG CGCCCGCGACAGAGCCCCCCAAGCCGGGCTGGGCCCTGACGCCGCAGGGA CTGGCGGCCATGCTCCCTGCGCAGCGCCACCGCCATCTGCTCTTCGGCGA CCTGCTGGAGGACGTGGGCGCGGCGGCCTCCACCTTCCCGTGCGGGTCGG TGGAACCGGGGTACCGCATGCCCGACCCGCGCCCGTGGACGCAGTCGCTC GAGCTGCCCGCCGAGCGCCAGAACCGGCTCCTCGGCGTCCTCAAGGCAGC GGAGGCCCGCGGGCGAGACCGCGCCCTGCGGCTGCGCTACACCCGCATGC GGGCCGAGGAGATCGCGCTGCTCATCCAGCGGCAGAAGTCCGCGCGCGCC GCCATCCGGCTGGAGCTGTTCCTGCCGCCGCAGCTGAAGCCCGCGCGGAT CCCGGACCCCCTGGACCGCCAAGAGCGGAGGCGCGTGGAGACCATCCTGG AGGAGAACGTGGATGGCACCATCTTCCCGCGG	chr20	64078376	64089398
a0004c0005	0/0	582	1	0	0	0	1	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	ATGCC others(577): Show ATGCCGCCGCCAGCGAAGGAGGGCGGGCGCAAGGGCCCGCGGGAGCGAAG CGGGAAGAGCGCGCCAGGCACGGCGCAGGGTGAGGAGCGTGCCAAGGGGG CGCCCGCGACAGAGCCCCCCAAGCCGGGCTGGGCCCTGACGCCGCAGGGA CTGGCGGCCATGCTCCCTGCGCAGCGCCACCGCCATCTGCTCTTCGGCGA CCTGCTGGAGGACGTGGGCGCGGCGGCCTCCACCTTCCCGTGCGGGTCGG TGGAACCGGGGTACCGCATGCCCGACCCGCGCCCGTGGACGCAGTCGCTC GAGCTGCCCGCCGAGCGCCAGAACCGGCTCCTCGGCGTCCTCAAGGCAGC GGAGGCCCGCGGGCGAGTCCGCGCCCTGCGGCTGCGCTACACCCGCATGC GGGCCGAGGAGATCGCGCTGCTCATCCAGCGGCAGAAGTCCGCGCGCGCC GCCATCCGGCTGGAGCTGTTCCTGCCGCTGCAGCTGAAGCCCGCGCGGAT CCCGGACCCCCTGGACCGCCAAGAGCGGAGGCGCGTGGAGACCATCCTGG AGGAGAACGTGGATGGCACCATCTTCCCGCGG	chr20	64078376	64089398

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	823	58	8	12	16	20	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	GGAGA others(818): Show GGAGAGGGAGAGCGCCTGGGCAAAGCTCAGAGGCTGGGGGTGCGGAACTC AAAACCGACTGCGGAGAGCCCAGCGGGCGGGAGCTGGGGCGCACGTTGGG GCCCTGCCGAGGGGCGGGCAGGGCCCGGTGCCAGCCCCGGCACCGACGGG ACGCCCTCCTCCCTCCGCAGGGCGGGAGGATGCCGCCGCCAGCGAAGGAG GGCGGGCGCAAGGGCCCGCGGGAGCGAAGCGGGAAGAGCGCGCCAGGCAC GGCGCAGGGTGAGGAGCGTGCCAAGGGGGCGCCCGCGACAGAGCCCCCCA AGCCGGGCTGGGCCCTGACGCCGCAGGGACTGGCGGCCATGCTCCCTGCG CAGCGCCACCGCCATCTGCTCTTCGGCGACCTGCTGGAGGACGTGGGCGC GGCGGCCTCCACCTTCCCGTGCGGGTCGGTGGAACCGGGGTACCGCATGC CCGACCCGCGCCCGTGGACGCAGTCGCTCGAGCTGCCCGCCGAGCGCCAG AACCGGCTCCTCGGCGTCCTCAAGGCAGCGGAGGCCCGCGGGCGAGTCCG CGCCCTGCGGCTGCGCTACACCCGCATGCGGGCCGAGGAGATCGCGCTGC TCATCCAGCGGCAGAAGTCCGCGCGCGCCGCCATCCGGCTGGAGCTGTTC CTGCCGCCGCAGCTGAAGCCCGCGCGGATCCCGGACCCCCTGGACCGCCA AGAGCGGAGGCGCGTGGAGACCATCCTGGAGGAGAACGTGGATGGCACCA TCTTCCCGCGGTGACGGCGACTGAGAGTGTGCGACGCGCCCCAGCCTCCC ACATAAAGTTATAATTCTCCGAA	chr20	64078376	64089398
a0001c0001t0002	0/0	823	21	4	5	6	6	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	GGAGA others(818): Show GGAGAGGGAGAGCGCCTGGGCAAAGCTCAGAGGCTGGGGGTGCGGAACTC AAAACCGACTGCGGAGAGCCCAGCGGGCGGGAGCTGGGGCGCACGTTGGG GCCCTGCCGAGGGGCGGGCAGGGCCCGGTGCCAGCCCCGGCACCGACGGG ACGCCCTCCTCCCTCCGCAGGGCGGGAGGATGCCGCCGCCAGCGAAGGAG GGCGGGCGCAAGGGCCCGCGGGAGCGAAGCGGGAAGAGCGCGCCAGGCAC GGCGCAGGGTGAGGAGCGTGCCAAGGGGGCGCCCGCGACAGAGCCCCCCA AGCCGGGCTGGGCCCTGACGCCGCAGGGACTGGCGGCCATGCTCCCTGCG CAGCGCCACCGCCATCTGCTCTTCGGCGACCTGCTGGAGGACGTGGGCGC GGCGGCCTCCACCTTCCCGTGCGGGTCGGTGGAACCGGGGTACCGCATGC CCGACCCGCGCCCGTGGACGCAGTCGCTCGAGCTGCCCGCCGAGCGCCAG AACCGGCTCCTCGGCGTCCTCAAGGCAGCGGAGGCCCGCGGGCGAGTCCG CGCCCTGCGGCTGCGCTACACCCGCATGCGGGCCGAGGAGATCGCGCTGC TCATCCAGCGGCAGAAGTCCGCGCGCGCCGCCATCCGGCTGGAGCTGTTC CTGCCGCCGCAGCTGAAGCCCGCGCGGATCCCGGACCCCCTGGACCGCCA AGAGCGGAGGCGCGTGGAGACCATCCTGGAGGAGAACGTGGATGGCACCA TCTTCCCGCGGTGACGGCCACTGAGAGTGTGCGACGCGCCCCAGCCTCCC ACATAAAGTTATAATTCTCCGAA	chr20	64078376	64089398
a0001c0003t0001	0/0	823	1	1	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	GGAGA others(818): Show GGAGAGGGAGAGCGCCTGGGCAAAGCTCAGAGGCTGGGGGTGCGGAACTC AAAACCGACTGCGGAGAGCCCAGCGGGCGGGAGCTGGGGCGCACGTTGGG GCCCTGCCGAGGGGCGGGCAGGGCCCGGTGCCAGCCCCGGCACCGACGGG ACGCCCTCCTCCCTCCGCAGGGCGGGAGGATGCCGCCGCCAGCGAAGGAG GGCGGGCGCAAGGGCCCGCGGGAGCGAAGCGGGAAGAGCGCGCCAGGCAC GGCGCAGGGTGAGGAGCGTGCCAAGGGGGCGCCCGCGACAGAGCCCCCCA AGCCGGGCTGGGCCCTGACGCCGCAGGGACTGGCGGCCATGCTCCCTGCG CAGCGACACCGCCATCTGCTCTTCGGCGACCTGCTGGAGGACGTGGGCGC GGCGGCCTCCACCTTCCCGTGCGGGTCGGTGGAACCGGGGTACCGCATGC CCGACCCGCGCCCGTGGACGCAGTCGCTCGAGCTGCCCGCCGAGCGCCAG AACCGGCTCCTCGGCGTCCTCAAGGCAGCGGAGGCCCGCGGGCGAGTCCG CGCCCTGCGGCTGCGCTACACCCGCATGCGGGCCGAGGAGATCGCGCTGC TCATCCAGCGGCAGAAGTCCGCGCGCGCCGCCATCCGGCTGGAGCTGTTC CTGCCGCCGCAGCTGAAGCCCGCGCGGATCCCGGACCCCCTGGACCGCCA AGAGCGGAGGCGCGTGGAGACCATCCTGGAGGAGAACGTGGATGGCACCA TCTTCCCGCGGTGACGGCGACTGAGAGTGTGCGACGCGCCCCAGCCTCCC ACATAAAGTTATAATTCTCCGAA	chr20	64078376	64089398
a0002c0002t0002	0/0	823	18	4	1	10	3	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	GGAGA others(818): Show GGAGAGGGAGAGCGCCTGGGCAAAGCTCAGAGGCTGGGGGTGCGGAACTC AAAACCGACTGCGGAGAGCCCAGCGGGCGGGAGCTGGGGCGCACGTTGGG GCCCTGCCGAGGGGCGGGCAGGGCCCGGTGCCAGCCCCGGCACCGACGGG ACGCCCTCCTCCCTCCGCAGGGCGGGAGGATGCCGCCGCCAGCGAAGGAG GGCTGGCGCAAGGGCCCGCGGGAGCGAAGCGGGAAGAGCGCGCCAGGCAC GGCGCAGGGTGAGGAGCGTGCCAAGGGGGCGCCCGCGACAGAGCCCCCCA AGCCGGGCTGGGCCCTGACGCCGCAGGGACTGGCGGCCATGCTCCCTGCG CAGCGCCACCGCCATCTGCTCTTCGGCGACCTGCTGGAGGACGTGGGCGC GGCGGCCTCCACCTTCCCGTGCGGGTCGGTGGAACCGGGGTACCGCATGC CCGACCCGCGCCCGTGGACGCAGTCGCTCGAGCTGCCCGCCGAGCGCCAG AACCGGCTCCTCGGCGTCCTCAAGGCAGCGGAGGCCCGCGGGCGAGTCCG CGCCCTGCGGCTGCGCTACACCCGCATGCGGGCCGAGGAGATCGCGCTGC TCATCCAGCGGCAGAAGTCCGCGCGCGCCGCCATCCGGCTGGAGCTGTTC CTGCCGCCGCAGCTGAAGCCCGCGCGGATCCCGGACCCCCTGGACCGCCA AGAGCGGAGGCGCGTGGAGACCATCCTGGAGGAGAACGTGGATGGCACCA TCTTCCCGCGGTGACGGCCACTGAGAGTGTGCGACGCGCCCCAGCCTCCC ACATAAAGTTATAATTCTCCGAA	chr20	64078376	64089398
a0002c0002t0003	0/0	823	2	2	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	GGAGA others(818): Show GGAGAGGGAGAGCGCCTGGGCAAAGCTCAGAGGCTGGGGGTGCGGAACTC AAAACCGACTGCGGAGAGCCCAGCGGGCGGGAGCTGGGGCGCACGTTGGA GCCCTGCCGAGGGGCGGGCAGGGCCCGGTGCCAGCCCCGGCACCGACGGG ACGCCCTCCTCCCTCCGCAGGGCGGGAGGATGCCGCCGCCAGCGAAGGAG GGCTGGCGCAAGGGCCCGCGGGAGCGAAGCGGGAAGAGCGCGCCAGGCAC GGCGCAGGGTGAGGAGCGTGCCAAGGGGGCGCCCGCGACAGAGCCCCCCA AGCCGGGCTGGGCCCTGACGCCGCAGGGACTGGCGGCCATGCTCCCTGCG CAGCGCCACCGCCATCTGCTCTTCGGCGACCTGCTGGAGGACGTGGGCGC GGCGGCCTCCACCTTCCCGTGCGGGTCGGTGGAACCGGGGTACCGCATGC CCGACCCGCGCCCGTGGACGCAGTCGCTCGAGCTGCCCGCCGAGCGCCAG AACCGGCTCCTCGGCGTCCTCAAGGCAGCGGAGGCCCGCGGGCGAGTCCG CGCCCTGCGGCTGCGCTACACCCGCATGCGGGCCGAGGAGATCGCGCTGC TCATCCAGCGGCAGAAGTCCGCGCGCGCCGCCATCCGGCTGGAGCTGTTC CTGCCGCCGCAGCTGAAGCCCGCGCGGATCCCGGACCCCCTGGACCGCCA AGAGCGGAGGCGCGTGGAGACCATCCTGGAGGAGAACGTGGATGGCACCA TCTTCCCGCGGTGACGGCCACTGAGAGTGTGCGACGCGCCCCAGCCTCCC ACATAAAGTTATAATTCTCCGAA	chr20	64078376	64089398
a0003c0004t0002	0/0	823	1	1	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	GGAGA others(818): Show GGAGAGGGAGAGCGCCTGGGCAAAGCTCAGAGGCTGGGGGTGCGGAACTC AAAACCGACTGCGGAGAGCCCAGCGGGCGGGAGCTGGGGCGCACGTTGGG GCCCTGCCGAGGGGCGGGCAGGGCCCGGTGCCAGCCCCGGCACCGACGGG ACGCCCTCCTCCCTCCGCAGGGCGGGAGGATGCCGCCGCCAGCGAAGGAG GGCGGGCGCAAGGGCCCGCGGGAGCGAAGCGGGAAGAGCGCGCCAGGCAC GGCGCAGGGTGAGGAGCGTGCCAAGGGGGCGCCCGCGACAGAGCCCCCCA AGCCGGGCTGGGCCCTGACGCCGCAGGGACTGGCGGCCATGCTCCCTGCG CAGCGCCACCGCCATCTGCTCTTCGGCGACCTGCTGGAGGACGTGGGCGC GGCGGCCTCCACCTTCCCGTGCGGGTCGGTGGAACCGGGGTACCGCATGC CCGACCCGCGCCCGTGGACGCAGTCGCTCGAGCTGCCCGCCGAGCGCCAG AACCGGCTCCTCGGCGTCCTCAAGGCAGCGGAGGCCCGCGGGCGAGACCG CGCCCTGCGGCTGCGCTACACCCGCATGCGGGCCGAGGAGATCGCGCTGC TCATCCAGCGGCAGAAGTCCGCGCGCGCCGCCATCCGGCTGGAGCTGTTC CTGCCGCCGCAGCTGAAGCCCGCGCGGATCCCGGACCCCCTGGACCGCCA AGAGCGGAGGCGCGTGGAGACCATCCTGGAGGAGAACGTGGATGGCACCA TCTTCCCGCGGTGACGGCCACTGAGAGTGTGCGACGCGCCCCAGCCTCCC ACATAAAGTTATAATTCTCCGAA	chr20	64078376	64089398
a0004c0005t0001	0/0	823	1	0	0	0	1	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	GGAGA others(818): Show GGAGAGGGAGAGCGCCTGGGCAAAGCTCAGAGGCTGGGGGTGCGGAACTC AAAACCGACTGCGGAGAGCCCAGCGGGCGGGAGCTGGGGCGCACGTTGGG GCCCTGCCGAGGGGCGGGCAGGGCCCGGTGCCAGCCCCGGCACCGACGGG ACGCCCTCCTCCCTCCGCAGGGCGGGAGGATGCCGCCGCCAGCGAAGGAG GGCGGGCGCAAGGGCCCGCGGGAGCGAAGCGGGAAGAGCGCGCCAGGCAC GGCGCAGGGTGAGGAGCGTGCCAAGGGGGCGCCCGCGACAGAGCCCCCCA AGCCGGGCTGGGCCCTGACGCCGCAGGGACTGGCGGCCATGCTCCCTGCG CAGCGCCACCGCCATCTGCTCTTCGGCGACCTGCTGGAGGACGTGGGCGC GGCGGCCTCCACCTTCCCGTGCGGGTCGGTGGAACCGGGGTACCGCATGC CCGACCCGCGCCCGTGGACGCAGTCGCTCGAGCTGCCCGCCGAGCGCCAG AACCGGCTCCTCGGCGTCCTCAAGGCAGCGGAGGCCCGCGGGCGAGTCCG CGCCCTGCGGCTGCGCTACACCCGCATGCGGGCCGAGGAGATCGCGCTGC TCATCCAGCGGCAGAAGTCCGCGCGCGCCGCCATCCGGCTGGAGCTGTTC CTGCCGCTGCAGCTGAAGCCCGCGCGGATCCCGGACCCCCTGGACCGCCA AGAGCGGAGGCGCGTGGAGACCATCCTGGAGGAGAACGTGGATGGCACCA TCTTCCCGCGGTGACGGCGACTGAGAGTGTGCGACGCGCCCCAGCCTCCC ACATAAAGTTATAATTCTCCGAA	chr20	64078376	64089398

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/1	56	6	12	16	20	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
a0001c0001t0001g0005	0/0	2	2	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
a0001c0001t0002g0002	0/0	21	4	5	6	6	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
a0001c0003t0001g0006	0/0	1	1	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
a0002c0002t0002g0003	0/0	18	4	1	10	3	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
a0002c0002t0003g0004	0/0	2	2	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
a0003c0004t0002g0007	0/0	1	1	0	0	0	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
a0004c0005t0001g0008	0/0	1	0	0	0	1	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01074	hp1	a0001	c0001	t0002	g0002	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01106	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01167	hp2	a0001	c0001	t0002	g0002	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01169	hp2	a0001	c0001	t0002	g0002	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01192	hp1	a0002	c0002	t0002	g0003	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01192	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01433	hp1	a0001	c0001	t0002	g0002	AMR	CLM	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01433	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01496	hp1	a0001	c0001	t0002	g0002	AMR	CLM	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01884	hp1	a0002	c0002	t0003	g0004	AFR	ACB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01884	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG01934	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02071	hp1	a0001	c0001	t0002	g0002	EAS	KHV	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02071	hp2	a0002	c0002	t0002	g0003	EAS	KHV	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02074	hp1	a0001	c0001	t0002	g0002	EAS	KHV	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02074	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02145	hp1	a0002	c0002	t0002	g0003	AFR	ACB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02145	hp2	a0002	c0002	t0002	g0003	AFR	ACB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02165	hp1	a0001	c0001	t0002	g0002	EAS	CDX	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02165	hp2	a0001	c0001	t0002	g0002	EAS	CDX	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02602	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02622	hp1	a0002	c0002	t0002	g0003	AFR	GWD	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02622	hp2	a0001	c0001	t0001	g0005	AFR	GWD	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02698	hp1	a0001	c0001	t0002	g0002	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02698	hp2	a0002	c0002	t0002	g0003	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02738	hp2	a0001	c0001	t0002	g0002	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02886	hp1	a0001	c0001	t0002	g0002	AFR	GWD	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02886	hp2	a0001	c0001	t0002	g0002	AFR	GWD	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02895	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02970	hp1	a0001	c0001	t0002	g0002	AFR	ESN	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02970	hp2	a0003	c0004	t0002	g0007	AFR	ESN	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03098	hp2	a0001	c0001	t0001	g0005	AFR	MSL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03453	hp1	a0002	c0002	t0002	g0003	AFR	MSL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03453	hp2	a0002	c0002	t0003	g0004	AFR	MSL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03490	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03492	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03579	hp1	a0001	c0001	t0002	g0002	AFR	MSL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03579	hp2	a0001	c0003	t0001	g0006	AFR	MSL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03669	hp2	a0002	c0002	t0002	g0003	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03704	hp1	a0001	c0001	t0002	g0002	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03834	hp1	a0001	c0001	t0002	g0002	SAS	BEB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03942	hp1	a0001	c0001	t0002	g0002	SAS	BEB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG03942	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG04184	hp1	a0004	c0005	t0001	g0008	SAS	BEB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG04199	hp1	a0001	c0001	t0002	g0002	SAS	STU	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG04199	hp2	a0001	c0001	t0001	g0001	SAS	STU	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG04204	hp2	a0001	c0001	t0001	g0001	SAS	STU	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG04228	hp2	a0002	c0002	t0002	g0003	SAS	STU	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18940	hp2	a0002	c0002	t0002	g0003	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18942	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18961	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18967	hp1	a0002	c0002	t0002	g0003	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18967	hp2	a0002	c0002	t0002	g0003	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18981	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18981	hp2	a0002	c0002	t0002	g0003	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA18999	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19002	hp1	a0002	c0002	t0002	g0003	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19007	hp2	a0002	c0002	t0002	g0003	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19011	hp1	a0002	c0002	t0002	g0003	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19060	hp1	a0002	c0002	t0002	g0003	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19060	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19064	hp2	a0002	c0002	t0002	g0003	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19077	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19077	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19081	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA19081	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
NA20905	hp2	a0001	c0001	t0001	g0001	SAS	GIH	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02559	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
HG02559	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
homoSapiens	chm13v2	a0001	c0001	t0001	g0001	REF	REF	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398
homoSapiens	grch38p0	a0001	c0001	t0001	g0001	REF	REF	LKAAEAR1_chr20_64078376_64089398	LKAAEAR1	chr20	64078376	64089398

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr20:64083629	G G	A A	1	a0004 a0004	1	HG04184.hp1 HG04184.hp1	missense_variant	MODERATE	c.479C>T c.479C>T	p.Pro160Leu p.Pro160Leu	LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding	2/3	658/823	479/585	160/194	chr20	64083629
chr20:64083852	A A	T T	1	a0003 a0003	1	HG02970.hp2 HG02970.hp2	missense_variant	MODERATE	c.368T>A c.368T>A	p.Val123Asp p.Val123Asp	LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding	1/3	547/823	368/585	123/194	chr20	64083852
chr20:64084195	C C	A A	1	a0002 a0002	20	HG01192.hp1 HG01884.hp1 HG02071.hp2 others(17): Show HG01192.hp1 HG01884.hp1 HG02071.hp2 HG02145.hp1 HG02145.hp2 HG02622.hp1 HG02698.hp2 HG03453.hp1 HG03453.hp2 HG03669.hp2 HG04228.hp2 NA18940.hp2 NA18967.hp1 NA18967.hp2 NA18981.hp2 NA19002.hp1 NA19007.hp2 NA19011.hp1 NA19060.hp1 NA19064.hp2	missense_variant	MODERATE	c.25G>T c.25G>T	p.Gly9Trp p.Gly9Trp	LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding	1/3	204/823	25/585	9/194	chr20	64084195

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr20:64084043	G G	T T	1	a0001c0003 a0001c0003	1	HG03579.hp2 HG03579.hp2	synonymous_variant	LOW	c.177C>A c.177C>A	p.Arg59Arg p.Arg59Arg	LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding	1/3	356/823	177/585	59/194			chr20	64084043

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr20:64083430	C C	G G	4	a0001c0001t0002 a0002c0002t0002 a0002c0002t0003 others(1): Show a0001c0001t0002 a0002c0002t0002 a0002c0002t0003 a0003c0004t0002	42	HG01074.hp1 HG01167.hp2 HG01169.hp2 others(39): Show HG01074.hp1 HG01167.hp2 HG01169.hp2 HG01192.hp1 HG01433.hp1 HG01496.hp1 HG01884.hp1 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02145.hp1 HG02145.hp2 HG02165.hp1 HG02165.hp2 HG02622.hp1 HG02698.hp1 HG02698.hp2 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG02970.hp1 HG02970.hp2 HG03453.hp1 HG03453.hp2 HG03579.hp1 HG03669.hp2 HG03704.hp1 HG03834.hp1 HG03942.hp1 HG04199.hp1 HG04228.hp2 NA18940.hp2 NA18942.hp1 NA18967.hp1 NA18967.hp2 NA18981.hp1 NA18981.hp2 NA19002.hp1 NA19007.hp2 NA19011.hp1 NA19060.hp1 NA19064.hp2	3_prime_UTR_variant	MODIFIER	c.5G>C c.5G>C		LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding	3/3				5		chr20	64083430
	chr20:64084299	C C	T T	1	a0002c0002t0003 a0002c0002t0003	2	HG01884.hp1 HG03453.hp2 HG01884.hp1 HG03453.hp2	5_prime_UTR_variant	MODIFIER	c.-80G>A c.-80G>A		LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding	1/3				80		chr20	64084299

view	chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr20:64083728	C C	A A	1	a0001c0001t0001g0005 a0001c0001t0001g0005	2	HG02622.hp2 HG03098.hp2 HG02622.hp2 HG03098.hp2	intron_variant	MODIFIER	c.403-23G>T c.403-23G>T		LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding	1/2						chr20	64083728
	chr20:64083736	G G	A A	1	a0002c0002t0002g0003 a0002c0002t0002g0003	18	HG01192.hp1 HG02071.hp2 HG02145.hp1 others(15): Show HG01192.hp1 HG02071.hp2 HG02145.hp1 HG02145.hp2 HG02622.hp1 HG02698.hp2 HG03453.hp1 HG03669.hp2 HG04228.hp2 NA18940.hp2 NA18967.hp1 NA18967.hp2 NA18981.hp2 NA19002.hp1 NA19007.hp2 NA19011.hp1 NA19060.hp1 NA19064.hp2	intron_variant	MODIFIER	c.403-31C>T c.403-31C>T		LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding	1/2						chr20	64083736

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LKAAEAR1_chr20_64078376_64089398 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 4)

Coding Level Haplotype Info (Total: 5)

Transcript Level Haplotype Info (Total: 7)

Genebody Level Haplotype Info (Total: 8)

Haplotype Details by Sample (Haploid Level) (Total: 102)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 1)

Transcript Level Haplotype Variants (Exon) (Total: 2)

Genebody Level Haplotype Variants (Intron) (Total: 2)

Annotation (Repeats)

Annotation (SNP Array)