JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LRRC40_chr1_70139805_70210579	0/0	a0006	602	1	0	0	1	0	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	a0007	602	1	0	0	0	0	1	copy fasta	LRRC40	chr1	70139805	70210579
LRRC40_chr1_70139805_70210579	0/0	a0008	602	1	0	0	0	1	0	copy fasta	LRRC40	chr1	70139805	70210579
LRRC41_chr1_46272462_46308616	1/1	a0001	812	279	85	61	100	11	20	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	a0002	812	85	1	6	55	3	20	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	a0003	812	2	0	0	2	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	a0004	812	1	1	0	0	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	a0005	812	1	0	1	0	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	a0006	812	1	0	0	1	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC41_chr1_46272462_46308616	0/0	a0007	812	1	1	0	0	0	0	copy fasta	LRRC41	chr1	46272462	46308616
LRRC42_chr1_53941350_53973168	1/1	a0001	428	301	83	50	126	10	30	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	a0002	428	8	7	1	0	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	a0003	428	3	0	0	3	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	a0004	428	2	1	1	0	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	a0005	428	1	0	0	1	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC42_chr1_53941350_53973168	0/0	a0006	428	1	1	0	0	0	0	copy fasta	LRRC42	chr1	53941350	53973168
LRRC43_chr12_122178123_122208471	1/1	a0001	656	305	57	45	151	15	35	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0002	656	41	10	21	7	0	3	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0003	656	10	10	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0004	656	8	7	1	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0005	663	4	0	3	0	1	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0006	656	4	4	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0007	656	3	0	3	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0008	660	3	3	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0009	656	2	2	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0010	656	2	0	0	0	0	2	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0011	656	2	0	0	0	0	2	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0012	656	1	0	0	0	1	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0013	656	1	0	0	1	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0014	656	1	0	1	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0015	656	1	0	0	0	1	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0016	656	1	1	0	0	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC43_chr12_122178123_122208471	0/0	a0017	656	1	0	0	1	0	0	copy fasta	LRRC43	chr12	122178123	122208471
LRRC45_chr17_82018305_82036151	1/1	a0001	670	390	92	69	172	12	43	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	a0002	670	5	1	2	0	2	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	a0003	670	3	0	0	3	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	a0004	670	2	0	0	2	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	a0005	670	2	0	0	0	0	2	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	a0006	670	2	2	0	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	a0007	670	1	0	0	1	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	a0008	670	1	0	1	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	a0009	342	1	0	0	0	0	1	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	a0010	670	1	1	0	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC46_chr17_47826670_47842719	1/1	a0001	321	371	84	79	147	17	42	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	a0002	317	18	15	3	0	0	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	a0003	321	1	0	0	1	0	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	a0004	321	1	1	0	0	0	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	a0005	321	1	0	0	0	1	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC47_chr1_3773559_3801498	1/1	a0001	583	388	86	78	156	18	48	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	a0002	583	18	0	2	16	0	0	copy fasta	LRRC47	chr1	3773559	3801498