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geneid	115353
ensemblid	ENSG00000116212.16
hgncid	28792
symbol	LRRC42
name	leucine rich repeat containing 42
refseq_nuc	NM_001256409.2
refseq_prot	NP_001243338.1
ensembl_nuc	ENST00000371370.8
ensembl_prot	ENSP00000360421.3
mane_status	MANE Select
chr	chr1
start	53946350
end	53968168
strand	+
ver	v1.2
region	chr1:53946350-53968168
region5000	chr1:53941350-53973168
regionname0	LRRC42_chr1_53946350_53968168
regionname5000	LRRC42_chr1_53941350_53973168

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	428	301	83	50	126	10	30	95	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0002	0/0	428	8	7	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0003	0/0	428	3	0	0	3	0	0	3	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0004	0/0	428	2	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0005	0/0	428	1	0	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0006	0/0	428	1	1	0	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	1287	206	18	41	111	7	27	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
c0002	0/0	1287	95	65	9	15	3	3	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
c0003	0/0	1287	5	4	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
c0004	0/0	1287	3	0	0	3	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
c0005	0/0	1287	3	3	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
c0006	0/0	1287	2	1	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
c0007	0/0	1287	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
c0008	0/0	1287	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	478	234	44	40	115	7	26	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
t0002	0/0	478	76	47	9	15	2	3	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
t0003	0/0	478	2	0	1	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
t0004	0/0	502	2	1	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
t0005	0/0	478	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
t0006	0/0	478	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/1	44	7	8	19	2	7	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0002	0/0	21	11	0	8	1	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0003	0/0	16	1	4	8	0	3	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0004	0/0	11	2	5	2	0	2	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0005	0/0	11	0	0	10	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0006	0/0	9	9	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0007	0/0	6	6	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0008	0/0	6	3	1	1	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0009	1/0	5	0	0	4	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0010	0/0	5	0	1	4	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0011	0/0	5	0	0	5	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0012	0/0	5	5	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0013	0/0	4	0	3	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0014	0/0	4	0	3	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0015	0/0	3	3	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0016	0/0	3	2	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0017	0/0	3	0	0	1	0	2	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0018	0/0	3	2	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0019	0/0	3	0	0	3	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0020	0/0	3	0	0	3	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0021	0/0	3	0	0	0	0	3	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0022	0/0	3	0	0	3	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0023	0/0	3	0	2	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0024	0/0	3	1	2	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0025	0/0	3	3	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0026	0/0	3	3	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0027	0/0	2	2	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0028	0/0	2	0	0	2	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0029	0/0	2	0	0	0	0	2	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0030	0/0	2	0	2	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0031	0/0	2	0	0	2	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0032	0/0	2	1	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0033	0/0	2	0	0	2	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0034	0/0	2	0	0	2	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0035	0/0	2	2	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0036	0/0	2	0	2	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0037	0/0	2	1	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0038	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0039	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0040	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0041	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0042	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0043	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0044	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0045	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0046	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0047	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0048	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0049	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0050	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0051	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0052	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0053	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0054	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0055	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0056	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0057	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0058	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0059	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0060	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0061	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0062	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0063	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0064	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0065	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0066	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0067	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0068	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0069	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0070	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0071	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0072	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0073	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0074	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0075	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0076	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0077	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0078	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0079	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0080	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0081	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0082	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0083	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0084	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0085	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0086	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0087	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0088	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0089	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0090	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0091	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0092	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0093	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0094	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0095	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0096	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0097	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0098	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0099	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0100	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0101	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0102	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0103	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0104	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0105	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0106	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0107	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0108	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0109	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0110	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0111	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0112	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0113	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0114	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0115	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0116	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0117	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0118	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0119	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0120	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0121	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0122	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0123	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0124	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0125	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0126	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0127	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0128	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0129	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0130	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0131	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0132	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0133	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0134	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0135	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0136	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0137	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0138	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0139	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0140	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0141	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0142	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
g0143	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	1287	206	18	41	111	7	27	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0001c0002	0/0	1287	95	65	9	15	3	3	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0002c0003	0/0	1287	5	4	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0002c0005	0/0	1287	3	3	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0003c0004	0/0	1287	3	0	0	3	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0004c0006	0/0	1287	2	1	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0005c0007	0/0	1287	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0006c0008	0/0	1287	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	1764	202	18	38	111	7	26	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0001c0001t0003	0/0	1764	2	0	1	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0001c0001t0005	0/0	1764	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0001c0001t0006	0/0	1764	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0001c0002t0001	0/0	1764	22	21	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0001c0002t0002	0/0	1764	71	43	8	15	2	3	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0001c0002t0004	0/0	1788	2	1	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0002c0003t0002	0/0	1764	5	4	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0002c0005t0001	0/0	1764	3	3	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0003c0004t0001	0/0	1764	3	0	0	3	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0004c0006t0001	0/0	1764	2	1	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0005c0007t0001	0/0	1764	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168
a0006c0008t0001	0/0	1764	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	copy fasta	chr1	53941350	53973168

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/1	40	6	6	19	2	6	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0003	0/0	16	1	4	8	0	3	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0004	0/0	9	2	4	1	0	2	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0005	0/0	11	0	0	10	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0009	1/0	5	0	0	4	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0010	0/0	5	0	1	4	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0011	0/0	5	0	0	5	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0013	0/0	4	0	3	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0014	0/0	4	0	3	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0017	0/0	3	0	0	1	0	2	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0018	0/0	3	2	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0019	0/0	2	0	0	2	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0020	0/0	3	0	0	3	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0021	0/0	3	0	0	0	0	3	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0022	0/0	3	0	0	3	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0027	0/0	2	2	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0029	0/0	2	0	0	0	0	2	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0030	0/0	2	0	2	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0031	0/0	2	0	0	2	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0032	0/0	2	1	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0033	0/0	2	0	0	2	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0034	0/0	2	0	0	2	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0041	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0043	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0044	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0045	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0051	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0052	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0053	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0054	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0055	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0057	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0058	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0059	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0060	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0061	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0062	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0063	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0064	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0065	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0066	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0067	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0069	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0070	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0071	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0072	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0073	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0074	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0075	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0076	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0077	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0078	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0079	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0080	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0081	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0082	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0083	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0084	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0085	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0086	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0087	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0088	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0089	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0090	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0091	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0092	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0093	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0094	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0095	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0096	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0097	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0099	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0100	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0101	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0102	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0103	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0104	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0105	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0106	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0107	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0108	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0109	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0112	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0113	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0114	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0115	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0116	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0117	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0118	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0119	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0120	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0121	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0001g0142	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0003g0001	0/0	2	0	1	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0005g0068	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0001t0006g0001	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0001g0006	0/0	9	9	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0001g0007	0/0	6	6	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0001g0038	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0001g0039	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0001g0040	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0001g0046	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0001g0047	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0001g0048	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0001g0049	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0002	0/0	21	11	0	8	1	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0008	0/0	6	3	1	1	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0012	0/0	5	5	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0015	0/0	3	3	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0016	0/0	3	2	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0023	0/0	3	0	2	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0024	0/0	3	1	2	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0025	0/0	3	3	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0035	0/0	2	2	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0036	0/0	2	0	2	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0042	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0122	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0123	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0124	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0125	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0126	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0127	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0128	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0129	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0130	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0131	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0132	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0133	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0134	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0135	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0136	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0139	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0140	0/0	1	0	0	0	0	1	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0141	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0002g0143	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0004g0137	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0001c0002t0004g0138	0/0	1	0	0	0	1	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0002c0003t0002g0026	0/0	3	3	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0002c0003t0002g0037	0/0	2	1	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0002c0005t0001g0050	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0002c0005t0001g0110	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0002c0005t0001g0111	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0003c0004t0001g0019	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0003c0004t0001g0028	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0003c0004t0001g0056	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0004c0006t0001g0001	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0004c0006t0001g0004	0/0	1	0	1	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0005c0007t0001g0004	0/0	1	0	0	1	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
a0006c0008t0001g0098	0/0	1	1	0	0	0	0	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0014	EUR	GBR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00099	hp2	a0001	c0002	t0002	g0023	EUR	GBR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00140	hp1	a0001	c0001	t0001	g0107	EUR	GBR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00140	hp2	a0001	c0001	t0001	g0104	EUR	GBR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00280	hp1	a0001	c0002	t0002	g0002	EUR	FIN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00280	hp2	a0001	c0001	t0001	g0105	EUR	FIN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00323	hp2	a0001	c0001	t0001	g0067	EUR	FIN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00423	hp1	a0001	c0001	t0001	g0003	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00423	hp2	a0001	c0001	t0001	g0011	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00438	hp1	a0001	c0001	t0001	g0004	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00438	hp2	a0001	c0001	t0001	g0086	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00544	hp1	a0001	c0001	t0001	g0010	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00544	hp2	a0001	c0001	t0001	g0017	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00558	hp1	a0001	c0002	t0002	g0132	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00558	hp2	a0001	c0001	t0001	g0005	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00597	hp1	a0001	c0001	t0001	g0061	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00609	hp1	a0001	c0001	t0001	g0003	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00609	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00639	hp1	a0001	c0001	t0001	g0003	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00639	hp2	a0001	c0002	t0002	g0016	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00642	hp1	a0004	c0006	t0001	g0004	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00642	hp2	a0001	c0001	t0001	g0018	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00673	hp1	a0001	c0002	t0002	g0002	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00673	hp2	a0001	c0001	t0001	g0073	EAS	CHS	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00733	hp1	a0001	c0001	t0001	g0100	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00733	hp2	a0001	c0001	t0005	g0068	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00735	hp1	a0001	c0001	t0001	g0014	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00735	hp2	a0001	c0001	t0003	g0001	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00738	hp1	a0001	c0001	t0001	g0013	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00738	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00741	hp1	a0001	c0001	t0001	g0044	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG00741	hp2	a0001	c0001	t0001	g0004	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01070	hp1	a0001	c0002	t0002	g0023	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01070	hp2	a0001	c0001	t0001	g0004	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01074	hp1	a0001	c0001	t0001	g0030	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01074	hp2	a0001	c0001	t0001	g0108	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01081	hp1	a0001	c0001	t0001	g0014	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01106	hp1	a0001	c0001	t0001	g0014	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01106	hp2	a0001	c0001	t0001	g0003	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01109	hp1	a0001	c0001	t0001	g0004	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01109	hp2	a0002	c0003	t0002	g0037	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01167	hp1	a0001	c0001	t0001	g0078	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01167	hp2	a0001	c0002	t0002	g0008	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01169	hp1	a0001	c0001	t0001	g0077	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01169	hp2	a0001	c0001	t0001	g0043	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01192	hp1	a0001	c0001	t0001	g0103	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01192	hp2	a0001	c0001	t0001	g0013	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01243	hp1	a0001	c0002	t0001	g0039	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01243	hp2	a0001	c0001	t0001	g0119	AMR	PUR	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01255	hp1	a0001	c0002	t0002	g0024	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01255	hp2	a0001	c0001	t0001	g0004	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01256	hp1	a0001	c0002	t0002	g0023	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01256	hp2	a0001	c0002	t0002	g0036	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01257	hp2	a0001	c0001	t0001	g0003	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01258	hp1	a0001	c0002	t0002	g0036	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01258	hp2	a0001	c0001	t0001	g0003	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01361	hp2	a0001	c0001	t0001	g0089	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01433	hp1	a0001	c0001	t0001	g0090	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01433	hp2	a0001	c0001	t0001	g0013	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01496	hp2	a0001	c0001	t0001	g0112	AMR	CLM	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01884	hp1	a0002	c0005	t0001	g0050	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01884	hp2	a0001	c0002	t0002	g0008	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01891	hp1	a0001	c0001	t0001	g0066	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01891	hp2	a0001	c0002	t0002	g0127	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01943	hp1	a0001	c0001	t0001	g0030	AMR	PEL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01943	hp2	a0001	c0001	t0001	g0010	AMR	PEL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01981	hp1	a0001	c0001	t0001	g0074	AMR	PEL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01981	hp2	a0001	c0001	t0001	g0084	AMR	PEL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01993	hp1	a0001	c0001	t0001	g0106	AMR	PEL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02040	hp1	a0001	c0001	t0001	g0003	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02040	hp2	a0001	c0001	t0001	g0009	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02055	hp1	a0001	c0002	t0002	g0122	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02055	hp2	a0001	c0001	t0001	g0081	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02056	hp1	a0001	c0001	t0001	g0076	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02056	hp2	a0001	c0001	t0001	g0005	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02080	hp1	a0001	c0002	t0002	g0130	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02083	hp2	a0001	c0001	t0001	g0011	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02132	hp1	a0001	c0002	t0002	g0002	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02132	hp2	a0001	c0001	t0001	g0116	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02135	hp1	a0001	c0001	t0001	g0010	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02135	hp2	a0005	c0007	t0001	g0004	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02145	hp1	a0001	c0002	t0001	g0006	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02145	hp2	a0001	c0002	t0002	g0008	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02155	hp1	a0001	c0001	t0001	g0088	EAS	CDX	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02155	hp2	a0001	c0001	t0001	g0013	EAS	CDX	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02257	hp1	a0006	c0008	t0001	g0098	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02257	hp2	a0001	c0002	t0002	g0035	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02280	hp1	a0001	c0002	t0001	g0040	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02280	hp2	a0001	c0002	t0002	g0025	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02300	hp1	a0001	c0002	t0002	g0024	AMR	PEL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02300	hp2	a0001	c0001	t0006	g0001	AMR	PEL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02451	hp1	a0001	c0002	t0001	g0006	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02451	hp2	a0001	c0002	t0002	g0002	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02523	hp1	a0001	c0001	t0001	g0063	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02523	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02572	hp1	a0001	c0002	t0002	g0042	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02572	hp2	a0001	c0002	t0001	g0007	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02602	hp1	a0001	c0001	t0001	g0004	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02602	hp2	a0001	c0001	t0003	g0001	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02615	hp1	a0001	c0002	t0002	g0025	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02615	hp2	a0001	c0001	t0001	g0018	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02630	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02630	hp2	a0001	c0002	t0001	g0006	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02647	hp1	a0001	c0002	t0001	g0007	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02647	hp2	a0001	c0002	t0001	g0006	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02683	hp1	a0001	c0001	t0001	g0069	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02683	hp2	a0001	c0002	t0002	g0002	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02698	hp1	a0001	c0001	t0001	g0045	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02698	hp2	a0001	c0001	t0001	g0003	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02717	hp1	a0001	c0001	t0001	g0018	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02717	hp2	a0001	c0001	t0001	g0093	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02723	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02723	hp2	a0002	c0005	t0001	g0110	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02735	hp2	a0001	c0001	t0001	g0060	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02738	hp1	a0001	c0002	t0002	g0140	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02738	hp2	a0001	c0001	t0001	g0080	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02809	hp1	a0001	c0001	t0001	g0004	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02809	hp2	a0001	c0001	t0001	g0115	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02818	hp1	a0001	c0001	t0001	g0004	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02818	hp2	a0001	c0002	t0002	g0002	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02886	hp1	a0001	c0002	t0001	g0007	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02886	hp2	a0001	c0002	t0002	g0015	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02895	hp1	a0001	c0001	t0001	g0027	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02895	hp2	a0001	c0002	t0002	g0123	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02896	hp1	a0001	c0002	t0002	g0012	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02896	hp2	a0001	c0002	t0002	g0129	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02897	hp1	a0001	c0001	t0001	g0027	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02897	hp2	a0001	c0002	t0002	g0012	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02922	hp1	a0002	c0003	t0002	g0026	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02922	hp2	a0001	c0002	t0002	g0002	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02965	hp1	a0001	c0002	t0001	g0006	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02965	hp2	a0001	c0002	t0002	g0002	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02970	hp1	a0001	c0002	t0002	g0012	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02970	hp2	a0001	c0002	t0002	g0016	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02976	hp1	a0001	c0002	t0001	g0049	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02976	hp2	a0001	c0002	t0002	g0128	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03041	hp2	a0001	c0002	t0001	g0046	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03098	hp1	a0001	c0002	t0001	g0038	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03098	hp2	a0001	c0002	t0001	g0006	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03130	hp1	a0001	c0002	t0002	g0012	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03130	hp2	a0002	c0003	t0002	g0026	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03139	hp1	a0001	c0002	t0002	g0008	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03139	hp2	a0002	c0003	t0002	g0037	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03195	hp1	a0001	c0002	t0001	g0007	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03195	hp2	a0002	c0003	t0002	g0026	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03209	hp1	a0001	c0001	t0001	g0032	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03209	hp2	a0001	c0002	t0002	g0002	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03225	hp1	a0001	c0002	t0002	g0134	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03225	hp2	a0001	c0002	t0001	g0048	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03486	hp1	a0001	c0002	t0001	g0006	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03486	hp2	a0001	c0002	t0001	g0007	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03490	hp1	a0001	c0001	t0001	g0017	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03490	hp2	a0001	c0001	t0001	g0005	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03491	hp1	a0001	c0001	t0001	g0021	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03491	hp2	a0001	c0001	t0001	g0029	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03492	hp1	a0001	c0001	t0001	g0017	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03492	hp2	a0001	c0001	t0001	g0029	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03516	hp1	a0001	c0002	t0002	g0002	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03516	hp2	a0001	c0002	t0002	g0015	AFR	ESN	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03540	hp1	a0001	c0002	t0002	g0025	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03540	hp2	a0001	c0002	t0002	g0002	AFR	GWD	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03654	hp1	a0001	c0001	t0001	g0041	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03654	hp2	a0001	c0001	t0001	g0082	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03669	hp2	a0001	c0001	t0001	g0003	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03710	hp2	a0001	c0002	t0002	g0008	SAS	PJL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03834	hp1	a0001	c0001	t0001	g0021	SAS	BEB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG04115	hp1	a0001	c0001	t0001	g0021	SAS	STU	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG04115	hp2	a0001	c0001	t0001	g0001	SAS	STU	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG04184	hp1	a0001	c0001	t0001	g0004	SAS	BEB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG04184	hp2	a0001	c0001	t0001	g0065	SAS	BEB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG04204	hp1	a0001	c0001	t0001	g0003	SAS	STU	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG04204	hp2	a0001	c0001	t0001	g0001	SAS	STU	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18522	hp1	a0001	c0002	t0002	g0012	AFR	YRI	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18522	hp2	a0001	c0002	t0002	g0035	AFR	YRI	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18612	hp2	a0001	c0001	t0001	g0031	EAS	CHB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18906	hp1	a0001	c0002	t0001	g0047	AFR	YRI	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18906	hp2	a0001	c0002	t0002	g0131	AFR	YRI	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18942	hp1	a0001	c0001	t0001	g0085	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18942	hp2	a0001	c0001	t0001	g0092	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18944	hp2	a0001	c0001	t0001	g0142	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18945	hp1	a0001	c0001	t0001	g0113	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18945	hp2	a0001	c0001	t0001	g0005	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18949	hp1	a0001	c0001	t0001	g0070	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18949	hp2	a0001	c0001	t0001	g0057	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18950	hp1	a0001	c0001	t0001	g0011	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18950	hp2	a0003	c0004	t0001	g0019	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18951	hp2	a0001	c0001	t0001	g0055	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18952	hp1	a0001	c0001	t0001	g0005	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18952	hp2	a0001	c0001	t0001	g0010	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18953	hp1	a0001	c0001	t0001	g0058	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18953	hp2	a0001	c0001	t0001	g0087	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18956	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18956	hp2	a0001	c0002	t0002	g0125	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18957	hp1	a0001	c0001	t0001	g0003	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18957	hp2	a0001	c0001	t0001	g0117	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18960	hp1	a0001	c0001	t0001	g0011	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18960	hp2	a0001	c0001	t0001	g0052	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18962	hp1	a0001	c0001	t0001	g0005	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18962	hp2	a0001	c0001	t0001	g0022	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18964	hp1	a0001	c0001	t0001	g0094	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18964	hp2	a0001	c0001	t0001	g0034	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18966	hp1	a0001	c0002	t0002	g0008	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18966	hp2	a0001	c0001	t0001	g0003	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18968	hp1	a0001	c0001	t0001	g0019	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18968	hp2	a0001	c0001	t0001	g0010	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18969	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18969	hp2	a0001	c0002	t0002	g0139	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18970	hp1	a0001	c0001	t0001	g0032	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18970	hp2	a0001	c0001	t0001	g0097	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18971	hp1	a0001	c0001	t0001	g0019	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18971	hp2	a0001	c0001	t0001	g0109	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18973	hp1	a0001	c0002	t0002	g0002	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18973	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18979	hp1	a0001	c0001	t0001	g0020	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18979	hp2	a0001	c0001	t0001	g0099	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18983	hp1	a0001	c0001	t0001	g0020	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18983	hp2	a0001	c0002	t0002	g0002	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18984	hp1	a0001	c0002	t0002	g0124	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18984	hp2	a0001	c0001	t0001	g0028	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18986	hp2	a0001	c0001	t0001	g0011	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18987	hp1	a0001	c0001	t0001	g0072	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18987	hp2	a0001	c0001	t0001	g0033	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18988	hp1	a0001	c0001	t0001	g0033	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18988	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18994	hp1	a0003	c0004	t0001	g0056	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18994	hp2	a0001	c0001	t0001	g0005	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18999	hp1	a0001	c0001	t0001	g0005	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18999	hp2	a0001	c0001	t0001	g0022	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19000	hp1	a0001	c0001	t0001	g0003	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19000	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19003	hp1	a0001	c0001	t0001	g0054	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19003	hp2	a0001	c0001	t0001	g0121	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19005	hp2	a0001	c0001	t0001	g0118	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19007	hp1	a0001	c0001	t0001	g0005	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19007	hp2	a0001	c0001	t0001	g0071	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19010	hp2	a0001	c0001	t0001	g0095	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19011	hp1	a0001	c0001	t0001	g0120	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19011	hp2	a0001	c0001	t0001	g0034	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19030	hp1	a0001	c0002	t0002	g0143	AFR	LWK	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19030	hp2	a0001	c0002	t0004	g0137	AFR	LWK	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19043	hp1	a0001	c0002	t0002	g0002	AFR	LWK	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19043	hp2	a0001	c0002	t0002	g0135	AFR	LWK	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19056	hp1	a0001	c0001	t0001	g0005	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19056	hp2	a0001	c0002	t0002	g0002	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19060	hp1	a0001	c0001	t0001	g0114	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19060	hp2	a0001	c0001	t0001	g0009	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19063	hp1	a0001	c0001	t0001	g0102	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19063	hp2	a0001	c0001	t0001	g0064	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19064	hp1	a0001	c0001	t0001	g0005	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19064	hp2	a0001	c0002	t0002	g0002	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19065	hp1	a0001	c0001	t0001	g0059	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19065	hp2	a0001	c0001	t0001	g0096	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19066	hp2	a0001	c0001	t0001	g0003	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19067	hp1	a0001	c0002	t0002	g0002	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19067	hp2	a0001	c0001	t0001	g0075	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19070	hp1	a0001	c0002	t0002	g0002	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19070	hp2	a0001	c0001	t0001	g0101	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19074	hp2	a0001	c0001	t0001	g0053	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19077	hp1	a0001	c0001	t0001	g0062	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19077	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19081	hp1	a0001	c0002	t0002	g0133	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19081	hp2	a0001	c0001	t0001	g0051	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19082	hp1	a0001	c0001	t0001	g0020	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19082	hp2	a0001	c0001	t0001	g0022	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19086	hp1	a0001	c0001	t0001	g0091	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19086	hp2	a0001	c0001	t0001	g0009	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19090	hp1	a0001	c0001	t0001	g0079	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19090	hp2	a0001	c0001	t0001	g0009	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19091	hp1	a0001	c0001	t0001	g0083	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19091	hp2	a0003	c0004	t0001	g0028	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19240	hp1	a0001	c0002	t0002	g0002	AFR	YRI	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA20129	hp1	a0001	c0002	t0002	g0016	AFR	ASW	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA20129	hp2	a0001	c0002	t0002	g0126	AFR	ASW	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA20752	hp2	a0001	c0002	t0004	g0138	EUR	TSI	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02109	hp1	a0001	c0002	t0001	g0006	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02109	hp2	a0001	c0002	t0002	g0024	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02486	hp1	a0001	c0001	t0001	g0003	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02486	hp2	a0001	c0002	t0001	g0007	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02559	hp1	a0002	c0005	t0001	g0111	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG02559	hp2	a0001	c0002	t0002	g0002	AFR	ACB	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03471	hp1	a0001	c0002	t0001	g0006	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG03471	hp2	a0001	c0002	t0002	g0141	AFR	MSL	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG06807	hp1	a0001	c0002	t0002	g0015	AFR	USA	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
HG06807	hp2	a0001	c0002	t0002	g0136	AFR	USA	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18955	hp1	a0001	c0001	t0001	g0003	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA18955	hp2	a0001	c0001	t0001	g0031	EAS	JPT	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA20300	hp2	a0001	c0002	t0002	g0002	AFR	USA	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA21309	hp1	a0004	c0006	t0001	g0001	AFR	LWK	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0009	REF	REF	LRRC42_chr1_53941350_53973168	LRRC42	chr1	53941350	53973168

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr1:53952123	A A	G G	1	a0004 a0004	2	HG00642.hp1 NA21309.hp1 HG00642.hp1 NA21309.hp1	missense_variant	MODERATE	c.124A>G c.124A>G	p.Arg42Gly p.Arg42Gly	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/9	372/1764	124/1287	42/428	chr1	53952123
chr1:53962341	G G	C C	1	a0005 a0005	1	HG02135.hp2 HG02135.hp2	missense_variant	MODERATE	c.859G>C c.859G>C	p.Val287Leu p.Val287Leu	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/9	1107/1764	859/1287	287/428	chr1	53962341
chr1:53967680	G G	T T	1	a0002 a0002	8	HG01109.hp2 HG01884.hp1 HG02559.hp1 others(5): Show HG01109.hp2 HG01884.hp1 HG02559.hp1 HG02723.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	missense_variant	MODERATE	c.1028G>T c.1028G>T	p.Arg343Leu p.Arg343Leu	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	9/9	1276/1764	1028/1287	343/428	chr1	53967680
chr1:53967781	G G	C C	1	a0006 a0006	1	HG02257.hp1 HG02257.hp1	missense_variant	MODERATE	c.1129G>C c.1129G>C	p.Val377Leu p.Val377Leu	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	9/9	1377/1764	1129/1287	377/428	chr1	53967781
chr1:53967835	C C	T T	1	a0003 a0003	3	NA18950.hp2 NA18994.hp1 NA19091.hp2 NA18950.hp2 NA18994.hp1 NA19091.hp2	missense_variant	MODERATE	c.1183C>T c.1183C>T	p.Pro395Ser p.Pro395Ser	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	9/9	1431/1764	1183/1287	395/428	chr1	53967835

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr1:53962322	C C	T T	1	a0002c0005 a0002c0005	3	HG01884.hp1 HG02559.hp1 HG02723.hp2 HG01884.hp1 HG02559.hp1 HG02723.hp2	synonymous_variant	LOW	c.840C>T c.840C>T	p.Leu280Leu p.Leu280Leu	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/9	1088/1764	840/1287	280/428			chr1	53962322
chr1:53966346	G G	A A	3	a0001c0002 a0002c0003 a0002c0005 a0001c0002 a0002c0003 a0002c0005	103	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(100): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01109.hp2 HG01167.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp2 HG02723.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	synonymous_variant	LOW	c.978G>A c.978G>A	p.Glu326Glu p.Glu326Glu	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/9	1226/1764	978/1287	326/428			chr1	53966346

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr1:53946491	G G	A A	1	a0001c0001t0003 a0001c0001t0003	2	HG00735.hp2 HG02602.hp2 HG00735.hp2 HG02602.hp2	5_prime_UTR_variant	MODIFIER	c.-107G>A c.-107G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/9	5509		chr1	53946491
chr1:53946508	T T	C C	3	a0001c0002t0002 a0001c0002t0004 a0002c0003t0002 a0001c0002t0002 a0001c0002t0004 a0002c0003t0002	78	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(75): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01109.hp2 HG01167.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp2 HG02300.hp1 HG02451.hp2 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02683.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03471.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	5_prime_UTR_variant	MODIFIER	c.-90T>C c.-90T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/9	5492		chr1	53946508
chr1:53947807	A A	G G	1	a0001c0001t0006 a0001c0001t0006	1	HG02300.hp2 HG02300.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-29A>G c.-29A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/9			chr1	53947807
chr1:53968074	G G	GTGGGAGG others(17): Show GTGGGAGGGGAATGCTATGGAAGTA	1	a0001c0002t0004 a0001c0002t0004	2	NA19030.hp2 NA20752.hp2 NA19030.hp2 NA20752.hp2	3_prime_UTR_variant	MODIFIER	c.138_161dupGGAGGG others(18): Show c.138_161dupGGAGGGGAATGCTATGGAAGTATG	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	9/9	162	INFO_REALIGN_3_PRIME	chr1	53968074
chr1:53968137	T T	C C	1	a0001c0001t0005 a0001c0001t0005	1	HG00733.hp2 HG00733.hp2	3_prime_UTR_variant	MODIFIER	c.198T>C c.198T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	9/9	198		chr1	53968137

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr1:53946622	G G	A A	2	a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0015 a0001c0002t0002g0016	6	HG00639.hp2 HG02886.hp2 HG02970.hp2 others(3): Show HG00639.hp2 HG02886.hp2 HG02970.hp2 HG03516.hp2 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-49+73G>A c.-49+73G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53946622
chr1:53946771	G G	A A	4	a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0001g0039 others(1): Show a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040	9	HG01243.hp1 HG02280.hp1 HG02486.hp2 others(6): Show HG01243.hp1 HG02280.hp1 HG02486.hp2 HG02572.hp2 HG02647.hp1 HG02886.hp1 HG03098.hp1 HG03195.hp1 HG03486.hp2	intron_variant	MODIFIER	c.-49+222G>A c.-49+222G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53946771
chr1:53946789	G G	A A	1	a0001c0001t0001g0041 a0001c0001t0001g0041	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.-49+240G>A c.-49+240G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53946789
chr1:53946865	T T	C C	1	a0001c0001t0001g0027 a0001c0001t0001g0027	2	HG02895.hp1 HG02897.hp1 HG02895.hp1 HG02897.hp1	intron_variant	MODIFIER	c.-49+316T>C c.-49+316T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53946865
chr1:53946892	C C	G G	3	a0001c0002t0002g0143 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0143 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02922.hp1 HG03130.hp2 others(3): Show HG01109.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2 NA19030.hp1	intron_variant	MODIFIER	c.-49+343C>G c.-49+343C>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53946892
chr1:53946950	G G	C C	1	a0001c0002t0002g0143 a0001c0002t0002g0143	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.-49+401G>C c.-49+401G>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53946950
chr1:53947117	G G	T T	1	a0001c0001t0001g0142 a0001c0001t0001g0142	1	NA18944.hp2 NA18944.hp2	intron_variant	MODIFIER	c.-49+568G>T c.-49+568G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53947117
chr1:53947230	G G	A A	1	a0001c0002t0002g0042 a0001c0002t0002g0042	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.-48-558G>A c.-48-558G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53947230
chr1:53947267	C C	T T	3	a0001c0002t0002g0025 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0002g0025 a0001c0002t0002g0141 a0001c0002t0002g0143	5	HG02280.hp2 HG02615.hp1 HG03471.hp2 others(2): Show HG02280.hp2 HG02615.hp1 HG03471.hp2 HG03540.hp1 NA19030.hp1	intron_variant	MODIFIER	c.-48-521C>T c.-48-521C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53947267
chr1:53947316	AAGAGTGT others(11): Show AAGAGTGTCACGTTGTGGG	A A	3	a0001c0002t0002g0025 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0002g0025 a0001c0002t0002g0141 a0001c0002t0002g0143	5	HG02280.hp2 HG02615.hp1 HG03471.hp2 others(2): Show HG02280.hp2 HG02615.hp1 HG03471.hp2 HG03540.hp1 NA19030.hp1	intron_variant	MODIFIER	c.-48-467_-48-450del others(18): Show c.-48-467_-48-450delTGTCACGTTGTGGGAGAG	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8	INFO_REALIGN_3_PRIME	chr1	53947316
chr1:53947321	T T	C C	2	a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0043 a0001c0001t0001g0044	2	HG00741.hp1 HG01169.hp2 HG00741.hp1 HG01169.hp2	intron_variant	MODIFIER	c.-48-467T>C c.-48-467T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53947321
chr1:53947682	T T	C C	1	a0001c0001t0001g0045 a0001c0001t0001g0045	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-48-106T>C c.-48-106T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53947682
chr1:53947749	C C	T T	34	a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 others(31): Show a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0042 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138 a0002c0003t0002g0026 a0002c0003t0002g0037	78	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(75): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01109.hp2 HG01167.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp2 HG02300.hp1 HG02451.hp2 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02683.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03471.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	intron_variant	MODIFIER	c.-48-39C>T c.-48-39C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	1/8		chr1	53947749
chr1:53947843	C C	T T	3	a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0140 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0140	7	HG00099.hp2 HG01070.hp1 HG01255.hp1 others(4): Show HG00099.hp2 HG01070.hp1 HG01255.hp1 HG01256.hp1 HG02109.hp2 HG02300.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-15+22C>T c.-15+22C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53947843
chr1:53947857	T T	G G	5	a0001c0002t0001g0006 a0001c0002t0001g0046 a0001c0002t0001g0047 others(2): Show a0001c0002t0001g0006 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049	13	HG02109.hp1 HG02145.hp1 HG02451.hp1 others(10): Show HG02109.hp1 HG02145.hp1 HG02451.hp1 HG02630.hp2 HG02647.hp2 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03098.hp2 HG03225.hp2 HG03471.hp1 HG03486.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-15+36T>G c.-15+36T>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53947857
chr1:53947881	T T	C C	1	a0001c0001t0001g0017 a0001c0001t0001g0017	3	HG00544.hp2 HG03490.hp1 HG03492.hp1 HG00544.hp2 HG03490.hp1 HG03492.hp1	intron_variant	MODIFIER	c.-15+60T>C c.-15+60T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53947881
chr1:53948219	T T	A A	1	a0002c0005t0001g0050 a0002c0005t0001g0050	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.-15+398T>A c.-15+398T>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948219
chr1:53948432	C C	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-15+611C>T c.-15+611C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948432
chr1:53948444	C C	A A	1	a0001c0002t0002g0141 a0001c0002t0002g0141	1	HG03471.hp2 HG03471.hp2	intron_variant	MODIFIER	c.-15+623C>A c.-15+623C>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948444
chr1:53948512	A A	G G	1	a0001c0002t0002g0139 a0001c0002t0002g0139	1	NA18969.hp2 NA18969.hp2	intron_variant	MODIFIER	c.-15+691A>G c.-15+691A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948512
chr1:53948523	A A	G G	2	a0001c0001t0001g0034 a0001c0001t0001g0121 a0001c0001t0001g0034 a0001c0001t0001g0121	3	NA18964.hp2 NA19003.hp2 NA19011.hp2 NA18964.hp2 NA19003.hp2 NA19011.hp2	intron_variant	MODIFIER	c.-15+702A>G c.-15+702A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948523
chr1:53948572	C C	T T	1	a0001c0001t0001g0120 a0001c0001t0001g0120	1	NA19011.hp1 NA19011.hp1	intron_variant	MODIFIER	c.-15+751C>T c.-15+751C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948572
chr1:53948763	A A	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-15+942A>G c.-15+942A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948763
chr1:53948805	A A	G G	2	a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0039 a0001c0002t0001g0040	2	HG01243.hp1 HG02280.hp1 HG01243.hp1 HG02280.hp1	intron_variant	MODIFIER	c.-15+984A>G c.-15+984A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948805
chr1:53948827	T T	C C	34	a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 others(31): Show a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0042 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138 a0002c0003t0002g0026 a0002c0003t0002g0037	78	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(75): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01109.hp2 HG01167.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp2 HG02300.hp1 HG02451.hp2 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02683.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03471.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	intron_variant	MODIFIER	c.-15+1006T>C c.-15+1006T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948827
chr1:53948872	G G	A A	1	a0001c0002t0002g0122 a0001c0002t0002g0122	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.-15+1051G>A c.-15+1051G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53948872
chr1:53949022	G G	A A	2	a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0001t0001g0018 a0001c0001t0001g0027	5	HG00642.hp2 HG02615.hp2 HG02717.hp1 others(2): Show HG00642.hp2 HG02615.hp2 HG02717.hp1 HG02895.hp1 HG02897.hp1	intron_variant	MODIFIER	c.-15+1201G>A c.-15+1201G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53949022
chr1:53949110	A A	G G	1	a0001c0001t0001g0119 a0001c0001t0001g0119	1	HG01243.hp2 HG01243.hp2	intron_variant	MODIFIER	c.-15+1289A>G c.-15+1289A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53949110
chr1:53949124	T T	C C	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	NA19081.hp2 NA19081.hp2	intron_variant	MODIFIER	c.-15+1303T>C c.-15+1303T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53949124
chr1:53949240	C C	G G	2	a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0117 a0001c0001t0001g0118	2	NA18957.hp2 NA19005.hp2 NA18957.hp2 NA19005.hp2	intron_variant	MODIFIER	c.-15+1419C>G c.-15+1419C>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53949240
chr1:53949613	C C	A A	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-15+1792C>A c.-15+1792C>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53949613
chr1:53949689	A A	T T	2	a0001c0002t0002g0025 a0001c0002t0002g0141 a0001c0002t0002g0025 a0001c0002t0002g0141	4	HG02280.hp2 HG02615.hp1 HG03471.hp2 others(1): Show HG02280.hp2 HG02615.hp1 HG03471.hp2 HG03540.hp1	intron_variant	MODIFIER	c.-15+1868A>T c.-15+1868A>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53949689
chr1:53949822	C C	T T	5	a0001c0002t0001g0006 a0001c0002t0001g0046 a0001c0002t0001g0047 others(2): Show a0001c0002t0001g0006 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049	13	HG02109.hp1 HG02145.hp1 HG02451.hp1 others(10): Show HG02109.hp1 HG02145.hp1 HG02451.hp1 HG02630.hp2 HG02647.hp2 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03098.hp2 HG03225.hp2 HG03471.hp1 HG03486.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-15+2001C>T c.-15+2001C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53949822
chr1:53949831	G G	C C	1	a0001c0002t0001g0046 a0001c0002t0001g0046	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-15+2010G>C c.-15+2010G>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53949831
chr1:53949941	C C	G G	1	a0001c0001t0001g0120 a0001c0001t0001g0120	1	NA19011.hp1 NA19011.hp1	intron_variant	MODIFIER	c.-14-2045C>G c.-14-2045C>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53949941
chr1:53950000	A A	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-14-1986A>G c.-14-1986A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950000
chr1:53950025	A A	G G	8	a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0024 others(5): Show a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0036 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0004g0137 a0001c0002t0004g0138	17	HG00099.hp2 HG01070.hp1 HG01255.hp1 others(14): Show HG00099.hp2 HG01070.hp1 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG02109.hp2 HG02300.hp1 HG02896.hp1 HG02897.hp2 HG02970.hp1 HG03130.hp1 HG06807.hp2 NA18522.hp1 NA19030.hp2 NA19043.hp2 NA20752.hp2	intron_variant	MODIFIER	c.-14-1961A>G c.-14-1961A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950025
chr1:53950311	A A	T T	1	a0001c0002t0002g0134 a0001c0002t0002g0134	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.-14-1675A>T c.-14-1675A>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950311
chr1:53950432	G G	T T	1	a0001c0001t0001g0116 a0001c0001t0001g0116	1	HG02132.hp2 HG02132.hp2	intron_variant	MODIFIER	c.-14-1554G>T c.-14-1554G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950432
chr1:53950528	C C	G G	136	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(133): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0051 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0121 a0001c0001t0003g0001 a0001c0001t0005g0068 a0001c0001t0006g0001 a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0042 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138 a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111 a0004c0006t0001g0001 a0004c0006t0001g0004 a0005c0007t0001g0004 a0006c0008t0001g0098	297	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(294): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp1 HG01169.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01943.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18945.hp2 NA18949.hp1 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18952.hp2 NA18953.hp2 NA18955.hp1 NA18955.hp2 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp2 NA18973.hp1 NA18973.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18986.hp1 NA18986.hp2 NA18987.hp1 NA18987.hp2 NA18988.hp1 NA18988.hp2 NA18994.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19003.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19056.hp2 NA19060.hp1 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19067.hp1 NA19067.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19077.hp1 NA19077.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19086.hp1 NA19090.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-14-1458C>G c.-14-1458C>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950528
chr1:53950728	T T	C C	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-14-1258T>C c.-14-1258T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950728
chr1:53950757	A A	T T	1	a0001c0001t0001g0115 a0001c0001t0001g0115	1	HG02809.hp2 HG02809.hp2	intron_variant	MODIFIER	c.-14-1229A>T c.-14-1229A>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950757
chr1:53950858	C C	T T	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.-14-1128C>T c.-14-1128C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950858
chr1:53950859	G G	A A	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	NA19065.hp1 NA19065.hp1	intron_variant	MODIFIER	c.-14-1127G>A c.-14-1127G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950859
chr1:53950969	G G	A A	1	a0001c0001t0001g0020 a0001c0001t0001g0020	3	NA18979.hp1 NA18983.hp1 NA19082.hp1 NA18979.hp1 NA18983.hp1 NA19082.hp1	intron_variant	MODIFIER	c.-14-1017G>A c.-14-1017G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950969
chr1:53950997	G G	A A	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-14-989G>A c.-14-989G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53950997
chr1:53951004	A A	G G	2	a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0113 a0001c0001t0001g0114	2	NA18945.hp1 NA19060.hp1 NA18945.hp1 NA19060.hp1	intron_variant	MODIFIER	c.-14-982A>G c.-14-982A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951004
chr1:53951120	C C	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-14-866C>T c.-14-866C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951120
chr1:53951145	A A	G G	2	a0001c0002t0002g0025 a0001c0002t0002g0141 a0001c0002t0002g0025 a0001c0002t0002g0141	4	HG02280.hp2 HG02615.hp1 HG03471.hp2 others(1): Show HG02280.hp2 HG02615.hp1 HG03471.hp2 HG03540.hp1	intron_variant	MODIFIER	c.-14-841A>G c.-14-841A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951145
chr1:53951376	T T	C C	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-14-610T>C c.-14-610T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951376
chr1:53951392	A A	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-14-594A>G c.-14-594A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951392
chr1:53951408	A A	C C	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-14-578A>C c.-14-578A>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951408
chr1:53951432	G G	T T	1	a0001c0001t0001g0112 a0001c0001t0001g0112	1	HG01496.hp2 HG01496.hp2	intron_variant	MODIFIER	c.-14-554G>T c.-14-554G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951432
chr1:53951454	C C	T T	1	a0001c0001t0001g0120 a0001c0001t0001g0120	1	NA19011.hp1 NA19011.hp1	intron_variant	MODIFIER	c.-14-532C>T c.-14-532C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951454
chr1:53951547	C C	A A	1	a0001c0001t0001g0060 a0001c0001t0001g0060	1	HG02735.hp2 HG02735.hp2	intron_variant	MODIFIER	c.-14-439C>A c.-14-439C>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951547
chr1:53951676	C C	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-14-310C>T c.-14-310C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951676
chr1:53951704	C C	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.-14-282C>T c.-14-282C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951704
chr1:53951705	G G	A A	1	a0001c0001t0001g0029 a0001c0001t0001g0029	2	HG03491.hp2 HG03492.hp2 HG03491.hp2 HG03492.hp2	intron_variant	MODIFIER	c.-14-281G>A c.-14-281G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951705
chr1:53951713	A A	C C	43	a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0038 others(40): Show a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0042 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138 a0002c0003t0002g0026 a0002c0003t0002g0037	100	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(97): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01109.hp2 HG01167.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	intron_variant	MODIFIER	c.-14-273A>C c.-14-273A>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951713
chr1:53951754	G G	A A	1	a0001c0002t0002g0123 a0001c0002t0002g0123	1	HG02895.hp2 HG02895.hp2	intron_variant	MODIFIER	c.-14-232G>A c.-14-232G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	2/8		chr1	53951754
chr1:53952485	A A	G G	1	a0001c0002t0002g0143 a0001c0002t0002g0143	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.473+13A>G c.473+13A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53952485
chr1:53952490	A A	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.473+18A>G c.473+18A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53952490
chr1:53952506	T T	C C	1	a0001c0001t0001g0113 a0001c0001t0001g0113	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.473+34T>C c.473+34T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53952506
chr1:53952791	G G	A A	1	a0001c0002t0002g0122 a0001c0002t0002g0122	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.473+319G>A c.473+319G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53952791
chr1:53952814	T T	A A	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	HG00597.hp1 HG00597.hp1	intron_variant	MODIFIER	c.473+342T>A c.473+342T>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53952814
chr1:53953028	T T	C C	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.473+556T>C c.473+556T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953028
chr1:53953032	C C	T T	4	a0001c0001t0001g0109 a0002c0005t0001g0050 a0002c0005t0001g0110 others(1): Show a0001c0001t0001g0109 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	4	HG01884.hp1 HG02559.hp1 HG02723.hp2 others(1): Show HG01884.hp1 HG02559.hp1 HG02723.hp2 NA18971.hp2	intron_variant	MODIFIER	c.473+560C>T c.473+560C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953032
chr1:53953174	T T	A A	1	a0001c0001t0001g0062 a0001c0001t0001g0062	1	NA19077.hp1 NA19077.hp1	intron_variant	MODIFIER	c.473+702T>A c.473+702T>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953174
chr1:53953360	T T	C C	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.473+888T>C c.473+888T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953360
chr1:53953397	C C	A A	2	a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0063 a0001c0001t0001g0064	2	HG02523.hp1 NA19063.hp2 HG02523.hp1 NA19063.hp2	intron_variant	MODIFIER	c.473+925C>A c.473+925C>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953397
chr1:53953445	C C	T T	2	a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0132 a0001c0002t0002g0133	2	HG00558.hp1 NA19081.hp1 HG00558.hp1 NA19081.hp1	intron_variant	MODIFIER	c.473+973C>T c.473+973C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953445
chr1:53953477	C C	T T	1	a0001c0002t0004g0138 a0001c0002t0004g0138	1	NA20752.hp2 NA20752.hp2	intron_variant	MODIFIER	c.473+1005C>T c.473+1005C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953477
chr1:53953512	C C	T T	1	a0001c0001t0001g0108 a0001c0001t0001g0108	1	HG01074.hp2 HG01074.hp2	intron_variant	MODIFIER	c.473+1040C>T c.473+1040C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953512
chr1:53953620	A A	G G	1	a0001c0001t0001g0107 a0001c0001t0001g0107	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.473+1148A>G c.473+1148A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953620
chr1:53953641	G G	C C	1	a0001c0002t0002g0036 a0001c0002t0002g0036	2	HG01256.hp2 HG01258.hp1 HG01256.hp2 HG01258.hp1	intron_variant	MODIFIER	c.473+1169G>C c.473+1169G>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953641
chr1:53953737	C C	CT CT	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.473+1278dupT c.473+1278dupT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8	INFO_REALIGN_3_PRIME	chr1	53953737
chr1:53953739	T T	C C	1	a0001c0001t0001g0065 a0001c0001t0001g0065	1	HG04184.hp2 HG04184.hp2	intron_variant	MODIFIER	c.473+1267T>C c.473+1267T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953739
chr1:53953830	C C	G G	1	a0001c0001t0001g0106 a0001c0001t0001g0106	1	HG01993.hp1 HG01993.hp1	intron_variant	MODIFIER	c.473+1358C>G c.473+1358C>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953830
chr1:53953853	T T	A A	55	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0010 others(52): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0041 a0001c0001t0001g0045 a0001c0001t0001g0051 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0003g0001 a0001c0001t0005g0068 a0001c0001t0006g0001 a0004c0006t0001g0001 a0004c0006t0001g0004 a0005c0007t0001g0004	117	HG00140.hp1 HG00323.hp1 HG00323.hp2 others(114): Show HG00140.hp1 HG00323.hp1 HG00323.hp2 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00642.hp1 HG00673.hp2 HG00733.hp2 HG00735.hp2 HG00738.hp2 HG00741.hp2 HG01070.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp2 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01255.hp2 HG01257.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01891.hp1 HG01943.hp1 HG01943.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02055.hp2 HG02056.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02155.hp1 HG02300.hp2 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02602.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02723.hp1 HG02735.hp1 HG02735.hp2 HG02738.hp2 HG02809.hp1 HG02818.hp1 HG03041.hp1 HG03491.hp1 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04204.hp2 NA18612.hp1 NA18612.hp2 NA18942.hp1 NA18944.hp1 NA18949.hp1 NA18950.hp1 NA18951.hp1 NA18952.hp2 NA18953.hp2 NA18955.hp2 NA18956.hp1 NA18957.hp2 NA18960.hp1 NA18962.hp2 NA18968.hp2 NA18969.hp1 NA18971.hp2 NA18973.hp2 NA18986.hp1 NA18986.hp2 NA18987.hp1 NA18988.hp2 NA18999.hp2 NA19000.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19063.hp2 NA19065.hp1 NA19066.hp1 NA19067.hp2 NA19074.hp1 NA19077.hp1 NA19077.hp2 NA19081.hp2 NA19082.hp2 NA19090.hp1 NA19091.hp1 NA19240.hp2 NA20300.hp1 NA20752.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.473+1381T>A c.473+1381T>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953853
chr1:53953888	T T	C C	8	a0001c0002t0002g0035 a0001c0002t0002g0042 a0001c0002t0002g0124 others(5): Show a0001c0002t0002g0035 a0001c0002t0002g0042 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0002c0003t0002g0026 a0002c0003t0002g0037	12	HG01109.hp2 HG01891.hp2 HG02257.hp2 others(9): Show HG01109.hp2 HG01891.hp2 HG02257.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2 NA18522.hp2 NA18956.hp2 NA18984.hp1 NA20129.hp2	intron_variant	MODIFIER	c.473+1416T>C c.473+1416T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53953888
chr1:53954057	A A	G G	6	a0001c0001t0001g0014 a0001c0001t0001g0043 a0001c0001t0001g0044 others(3): Show a0001c0001t0001g0014 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105	9	HG00099.hp1 HG00140.hp2 HG00280.hp2 others(6): Show HG00099.hp1 HG00140.hp2 HG00280.hp2 HG00735.hp1 HG00741.hp1 HG01081.hp1 HG01106.hp1 HG01169.hp2 HG01192.hp1	intron_variant	MODIFIER	c.473+1585A>G c.473+1585A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53954057
chr1:53954163	T T	C C	5	a0001c0002t0002g0035 a0001c0002t0002g0124 a0001c0002t0002g0125 others(2): Show a0001c0002t0002g0035 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127	6	HG01891.hp2 HG02257.hp2 NA18522.hp2 others(3): Show HG01891.hp2 HG02257.hp2 NA18522.hp2 NA18956.hp2 NA18984.hp1 NA20129.hp2	intron_variant	MODIFIER	c.473+1691T>C c.473+1691T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53954163
chr1:53954422	G G	A A	1	a0001c0002t0002g0124 a0001c0002t0002g0124	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.473+1950G>A c.473+1950G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53954422
chr1:53954619	T T	A A	1	a0001c0002t0002g0143 a0001c0002t0002g0143	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.473+2147T>A c.473+2147T>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53954619
chr1:53954621	T T	G G	1	a0001c0002t0002g0135 a0001c0002t0002g0135	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.473+2149T>G c.473+2149T>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53954621
chr1:53954646	G G	A A	1	a0002c0005t0001g0050 a0002c0005t0001g0050	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.473+2174G>A c.473+2174G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53954646
chr1:53955049	T T	C C	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA18960.hp2 NA18960.hp2	intron_variant	MODIFIER	c.473+2577T>C c.473+2577T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955049
chr1:53955099	G G	A A	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.473+2627G>A c.473+2627G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955099
chr1:53955156	C C	T T	1	a0001c0001t0001g0027 a0001c0001t0001g0027	2	HG02895.hp1 HG02897.hp1 HG02895.hp1 HG02897.hp1	intron_variant	MODIFIER	c.473+2684C>T c.473+2684C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955156
chr1:53955229	T T	C C	2	a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0015 a0001c0002t0002g0016	6	HG00639.hp2 HG02886.hp2 HG02970.hp2 others(3): Show HG00639.hp2 HG02886.hp2 HG02970.hp2 HG03516.hp2 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.473+2757T>C c.473+2757T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955229
chr1:53955462	A A	C C	8	a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0002t0002g0035 others(5): Show a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0002t0002g0035 a0001c0002t0002g0122 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127	9	HG01361.hp2 HG01433.hp1 HG01891.hp2 others(6): Show HG01361.hp2 HG01433.hp1 HG01891.hp2 HG02055.hp1 HG02257.hp2 NA18522.hp2 NA18956.hp2 NA18984.hp1 NA20129.hp2	intron_variant	MODIFIER	c.474-2687A>C c.474-2687A>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955462
chr1:53955529	C C	T T	11	a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0123 others(8): Show a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0123 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0139	36	HG00280.hp1 HG00558.hp1 HG00673.hp1 others(33): Show HG00280.hp1 HG00558.hp1 HG00673.hp1 HG01167.hp2 HG01884.hp2 HG02080.hp1 HG02132.hp1 HG02145.hp2 HG02451.hp2 HG02559.hp2 HG02683.hp2 HG02818.hp2 HG02895.hp2 HG02896.hp2 HG02922.hp2 HG02965.hp2 HG02976.hp2 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03516.hp1 HG03540.hp2 HG03710.hp2 NA18906.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA19043.hp1 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20300.hp2	intron_variant	MODIFIER	c.474-2620C>T c.474-2620C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955529
chr1:53955546	C C	T T	8	a0001c0001t0001g0019 a0001c0001t0001g0028 a0001c0001t0001g0052 others(5): Show a0001c0001t0001g0019 a0001c0001t0001g0028 a0001c0001t0001g0052 a0001c0001t0001g0057 a0001c0001t0001g0058 a0003c0004t0001g0019 a0003c0004t0001g0028 a0003c0004t0001g0056	9	NA18949.hp2 NA18950.hp2 NA18953.hp1 others(6): Show NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18960.hp2 NA18968.hp1 NA18971.hp1 NA18984.hp2 NA18994.hp1 NA19091.hp2	intron_variant	MODIFIER	c.474-2603C>T c.474-2603C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955546
chr1:53955556	C C	T T	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	NA19081.hp2 NA19081.hp2	intron_variant	MODIFIER	c.474-2593C>T c.474-2593C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955556
chr1:53955577	C C	T T	1	a0001c0001t0001g0090 a0001c0001t0001g0090	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.474-2572C>T c.474-2572C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955577
chr1:53955610	A A	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.474-2539A>T c.474-2539A>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955610
chr1:53955628	CT CT	C C	6	a0001c0001t0001g0066 a0001c0001t0001g0091 a0001c0001t0001g0092 others(3): Show a0001c0001t0001g0066 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0117 a0001c0002t0002g0123 a0001c0002t0002g0128	6	HG01891.hp1 HG02895.hp2 HG02976.hp2 others(3): Show HG01891.hp1 HG02895.hp2 HG02976.hp2 NA18942.hp2 NA18957.hp2 NA19086.hp1	intron_variant	MODIFIER	c.474-2503delT c.474-2503delT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8	INFO_REALIGN_3_PRIME	chr1	53955628
chr1:53955659	C C	T T	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	HG02155.hp1 HG02155.hp1	intron_variant	MODIFIER	c.474-2490C>T c.474-2490C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955659
chr1:53955691	C C	T T	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	NA18953.hp2 NA18953.hp2	intron_variant	MODIFIER	c.474-2458C>T c.474-2458C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955691
chr1:53955721	C C	T T	1	a0001c0001t0001g0121 a0001c0001t0001g0121	1	NA19003.hp2 NA19003.hp2	intron_variant	MODIFIER	c.474-2428C>T c.474-2428C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955721
chr1:53955778	A A	G G	136	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(133): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0051 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0121 a0001c0001t0003g0001 a0001c0001t0005g0068 a0001c0001t0006g0001 a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0042 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138 a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111 a0004c0006t0001g0001 a0004c0006t0001g0004 a0005c0007t0001g0004 a0006c0008t0001g0098	297	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(294): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp1 HG01169.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01943.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18945.hp2 NA18949.hp1 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18952.hp2 NA18953.hp2 NA18955.hp1 NA18955.hp2 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp2 NA18973.hp1 NA18973.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18986.hp1 NA18986.hp2 NA18987.hp1 NA18987.hp2 NA18988.hp1 NA18988.hp2 NA18994.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19003.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19056.hp2 NA19060.hp1 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19067.hp1 NA19067.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19077.hp1 NA19077.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19086.hp1 NA19090.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.474-2371A>G c.474-2371A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955778
chr1:53955918	G G	A A	2	a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0015 a0001c0002t0002g0016	6	HG00639.hp2 HG02886.hp2 HG02970.hp2 others(3): Show HG00639.hp2 HG02886.hp2 HG02970.hp2 HG03516.hp2 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.474-2231G>A c.474-2231G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955918
chr1:53955924	G G	A A	23	a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 others(20): Show a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0036 a0001c0002t0002g0123 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138	61	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(58): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01167.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG02080.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp2 HG02300.hp1 HG02451.hp2 HG02559.hp2 HG02683.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp2	intron_variant	MODIFIER	c.474-2225G>A c.474-2225G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955924
chr1:53955929	A A	G G	4	a0001c0001t0001g0011 a0001c0001t0001g0085 a0001c0001t0001g0086 others(1): Show a0001c0001t0001g0011 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087	8	HG00423.hp2 HG00438.hp2 HG02083.hp2 others(5): Show HG00423.hp2 HG00438.hp2 HG02083.hp2 NA18942.hp1 NA18950.hp1 NA18953.hp2 NA18960.hp1 NA18986.hp2	intron_variant	MODIFIER	c.474-2220A>G c.474-2220A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955929
chr1:53955949	T T	A A	1	a0001c0001t0001g0103 a0001c0001t0001g0103	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.474-2200T>A c.474-2200T>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53955949
chr1:53956280	C C	T T	1	a0001c0001t0001g0084 a0001c0001t0001g0084	1	HG01981.hp2 HG01981.hp2	intron_variant	MODIFIER	c.474-1869C>T c.474-1869C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53956280
chr1:53956331	G G	A A	2	a0001c0001t0001g0030 a0001c0001t0001g0107 a0001c0001t0001g0030 a0001c0001t0001g0107	3	HG00140.hp1 HG01074.hp1 HG01943.hp1 HG00140.hp1 HG01074.hp1 HG01943.hp1	intron_variant	MODIFIER	c.474-1818G>A c.474-1818G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53956331
chr1:53956717	T T	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.474-1432T>G c.474-1432T>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53956717
chr1:53956831	G G	A A	1	a0001c0002t0002g0141 a0001c0002t0002g0141	1	HG03471.hp2 HG03471.hp2	intron_variant	MODIFIER	c.474-1318G>A c.474-1318G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53956831
chr1:53957000	C C	G G	3	a0001c0001t0001g0083 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0083 a0001c0001t0001g0117 a0001c0001t0001g0118	3	NA18957.hp2 NA19005.hp2 NA19091.hp1 NA18957.hp2 NA19005.hp2 NA19091.hp1	intron_variant	MODIFIER	c.474-1149C>G c.474-1149C>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53957000
chr1:53957022	G G	A A	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.474-1127G>A c.474-1127G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53957022
chr1:53957083	C C	A A	1	a0001c0001t0001g0093 a0001c0001t0001g0093	1	HG02717.hp2 HG02717.hp2	intron_variant	MODIFIER	c.474-1066C>A c.474-1066C>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53957083
chr1:53957228	C C	G G	11	a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0123 others(8): Show a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0123 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0139	36	HG00280.hp1 HG00558.hp1 HG00673.hp1 others(33): Show HG00280.hp1 HG00558.hp1 HG00673.hp1 HG01167.hp2 HG01884.hp2 HG02080.hp1 HG02132.hp1 HG02145.hp2 HG02451.hp2 HG02559.hp2 HG02683.hp2 HG02818.hp2 HG02895.hp2 HG02896.hp2 HG02922.hp2 HG02965.hp2 HG02976.hp2 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03516.hp1 HG03540.hp2 HG03710.hp2 NA18906.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA19043.hp1 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20300.hp2	intron_variant	MODIFIER	c.474-921C>G c.474-921C>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53957228
chr1:53957311	G G	A A	13	a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0002g0002 others(10): Show a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0123 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0139	43	HG00280.hp1 HG00558.hp1 HG00673.hp1 others(40): Show HG00280.hp1 HG00558.hp1 HG00673.hp1 HG01167.hp2 HG01884.hp2 HG02080.hp1 HG02132.hp1 HG02145.hp2 HG02451.hp2 HG02486.hp2 HG02559.hp2 HG02572.hp2 HG02647.hp1 HG02683.hp2 HG02818.hp2 HG02886.hp1 HG02895.hp2 HG02896.hp2 HG02922.hp2 HG02965.hp2 HG02976.hp2 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03486.hp2 HG03516.hp1 HG03540.hp2 HG03710.hp2 NA18906.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA19043.hp1 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20300.hp2	intron_variant	MODIFIER	c.474-838G>A c.474-838G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53957311
chr1:53957739	C C	T T	2	a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0089 a0001c0001t0001g0090	2	HG01361.hp2 HG01433.hp1 HG01361.hp2 HG01433.hp1	intron_variant	MODIFIER	c.474-410C>T c.474-410C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53957739
chr1:53957859	G G	C C	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	HG00323.hp2 HG00323.hp2	intron_variant	MODIFIER	c.474-290G>C c.474-290G>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53957859
chr1:53957873	T T	C C	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.474-276T>C c.474-276T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53957873
chr1:53957905	C C	CATTTATT others(5): Show CATTTATTTATTT	1	a0001c0002t0002g0042 a0001c0002t0002g0042	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.474-228_474-217dup others(12): Show c.474-228_474-217dupTATTTATTTATT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8	INFO_REALIGN_3_PRIME	chr1	53957905
chr1:53957905	C C	CATTTATT others(9): Show CATTTATTTATTTATTT	2	a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0003t0002g0026 a0002c0003t0002g0037	5	HG01109.hp2 HG02922.hp1 HG03130.hp2 others(2): Show HG01109.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.474-232_474-217dup others(16): Show c.474-232_474-217dupTATTTATTTATTTATT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8	INFO_REALIGN_3_PRIME	chr1	53957905
chr1:53957951	A A	C C	1	a0001c0002t0002g0131 a0001c0002t0002g0131	1	NA18906.hp2 NA18906.hp2	intron_variant	MODIFIER	c.474-198A>C c.474-198A>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53957951
chr1:53958130	T T	C C	1	a0001c0002t0002g0135 a0001c0002t0002g0135	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.474-19T>C c.474-19T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	3/8		chr1	53958130
chr1:53958353	T T	G G	1	a0001c0002t0002g0129 a0001c0002t0002g0129	1	HG02896.hp2 HG02896.hp2	intron_variant	MODIFIER	c.605+73T>G c.605+73T>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958353
chr1:53958577	A A	ATTTATT ATTTATT	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.605+313_605+318dup others(6): Show c.605+313_605+318dupATTTTT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8	INFO_REALIGN_3_PRIME	chr1	53958577
chr1:53958616	C C	T T	1	a0002c0003t0002g0026 a0002c0003t0002g0026	3	HG02922.hp1 HG03130.hp2 HG03195.hp2 HG02922.hp1 HG03130.hp2 HG03195.hp2	intron_variant	MODIFIER	c.605+336C>T c.605+336C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958616
chr1:53958700	C C	T T	2	a0001c0001t0001g0045 a0001c0002t0002g0143 a0001c0001t0001g0045 a0001c0002t0002g0143	2	HG02698.hp1 NA19030.hp1 HG02698.hp1 NA19030.hp1	intron_variant	MODIFIER	c.605+420C>T c.605+420C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958700
chr1:53958743	C C	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.605+463C>T c.605+463C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958743
chr1:53958775	G G	A A	31	a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 others(28): Show a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138	72	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(69): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01167.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp2 HG02300.hp1 HG02451.hp2 HG02559.hp2 HG02615.hp1 HG02683.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03471.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	intron_variant	MODIFIER	c.605+495G>A c.605+495G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958775
chr1:53958786	G G	GT GT	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.605+507dupT c.605+507dupT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8	INFO_REALIGN_3_PRIME	chr1	53958786
chr1:53958846	A A	C C	1	a0001c0001t0001g0102 a0001c0001t0001g0102	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.605+566A>C c.605+566A>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958846
chr1:53958878	G G	A A	2	a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0003t0002g0026 a0002c0003t0002g0037	5	HG01109.hp2 HG02922.hp1 HG03130.hp2 others(2): Show HG01109.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.605+598G>A c.605+598G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958878
chr1:53958903	T T	A A	1	a0001c0001t0005g0068 a0001c0001t0005g0068	1	HG00733.hp2 HG00733.hp2	intron_variant	MODIFIER	c.605+623T>A c.605+623T>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958903
chr1:53958958	C C	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.605+678C>T c.605+678C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958958
chr1:53958995	A A	C C	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.605+715A>C c.605+715A>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53958995
chr1:53959038	C C	T T	1	a0001c0001t0001g0101 a0001c0001t0001g0101	1	NA19070.hp2 NA19070.hp2	intron_variant	MODIFIER	c.605+758C>T c.605+758C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53959038
chr1:53959043	C C	T T	2	a0001c0001t0001g0060 a0001c0001t0001g0082 a0001c0001t0001g0060 a0001c0001t0001g0082	2	HG02735.hp2 HG03654.hp2 HG02735.hp2 HG03654.hp2	intron_variant	MODIFIER	c.605+763C>T c.605+763C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53959043
chr1:53959096	T T	C C	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.605+816T>C c.605+816T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53959096
chr1:53959453	C C	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.606-903C>T c.606-903C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53959453
chr1:53959457	C C	T T	2	a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0089 a0001c0001t0001g0090	2	HG01361.hp2 HG01433.hp1 HG01361.hp2 HG01433.hp1	intron_variant	MODIFIER	c.606-899C>T c.606-899C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53959457
chr1:53959531	T T	C C	49	a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0001t0001g0115 others(46): Show a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0001t0001g0115 a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0042 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138 a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	109	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(106): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00642.hp2 HG00673.hp1 HG01070.hp1 HG01109.hp2 HG01167.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp2 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	intron_variant	MODIFIER	c.606-825T>C c.606-825T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53959531
chr1:53959755	C C	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.606-601C>G c.606-601C>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53959755
chr1:53959904	A A	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.606-452A>G c.606-452A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53959904
chr1:53959919	C C	CT CT	14	a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 others(11): Show a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0002t0001g0038 a0001c0002t0001g0040 a0001c0002t0001g0046 a0001c0002t0001g0049 a0001c0002t0002g0130 a0001c0002t0002g0140 a0001c0002t0002g0143 a0001c0002t0004g0137 a0002c0005t0001g0111	14	HG00733.hp1 HG02055.hp2 HG02080.hp1 others(11): Show HG00733.hp1 HG02055.hp2 HG02080.hp1 HG02280.hp1 HG02559.hp1 HG02717.hp2 HG02738.hp1 HG02738.hp2 HG02976.hp1 HG03041.hp2 HG03098.hp1 NA19030.hp1 NA19030.hp2 NA19090.hp1	intron_variant	MODIFIER	c.606-420dupT c.606-420dupT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8	INFO_REALIGN_3_PRIME	chr1	53959919
chr1:53960105	C C	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.606-251C>T c.606-251C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53960105
chr1:53960264	A A	G G	1	a0001c0001t0001g0118 a0001c0001t0001g0118	1	NA19005.hp2 NA19005.hp2	intron_variant	MODIFIER	c.606-92A>G c.606-92A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53960264
chr1:53960335	G G	A A	1	a0001c0001t0001g0115 a0001c0001t0001g0115	1	HG02809.hp2 HG02809.hp2	intron_variant	MODIFIER	c.606-21G>A c.606-21G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	4/8		chr1	53960335
chr1:53960478	A A	C C	2	a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0077 a0001c0001t0001g0078	2	HG01167.hp1 HG01169.hp1 HG01167.hp1 HG01169.hp1	splice_region_variant&intron_variant	LOW	c.724+4A>C c.724+4A>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53960478
chr1:53960488	G G	A A	1	a0001c0001t0001g0094 a0001c0001t0001g0094	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.724+14G>A c.724+14G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53960488
chr1:53960626	A A	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.724+152A>G c.724+152A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53960626
chr1:53960628	G G	A A	1	a0001c0002t0002g0025 a0001c0002t0002g0025	3	HG02280.hp2 HG02615.hp1 HG03540.hp1 HG02280.hp2 HG02615.hp1 HG03540.hp1	intron_variant	MODIFIER	c.724+154G>A c.724+154G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53960628
chr1:53960811	G G	A A	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.724+337G>A c.724+337G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53960811
chr1:53960919	A A	C C	1	a0002c0005t0001g0110 a0002c0005t0001g0110	1	HG02723.hp2 HG02723.hp2	intron_variant	MODIFIER	c.724+445A>C c.724+445A>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53960919
chr1:53961085	T T	C C	2	a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0067 a0001c0001t0001g0069	2	HG00323.hp2 HG02683.hp1 HG00323.hp2 HG02683.hp1	intron_variant	MODIFIER	c.724+611T>C c.724+611T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961085
chr1:53961135	C C	T T	31	a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 others(28): Show a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138	72	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(69): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01167.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp2 HG02300.hp1 HG02451.hp2 HG02559.hp2 HG02615.hp1 HG02683.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03471.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	intron_variant	MODIFIER	c.724+661C>T c.724+661C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961135
chr1:53961137	C C	T T	2	a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0039 a0001c0002t0001g0040	2	HG01243.hp1 HG02280.hp1 HG01243.hp1 HG02280.hp1	intron_variant	MODIFIER	c.724+663C>T c.724+663C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961137
chr1:53961138	G G	A A	1	a0001c0001t0001g0031 a0001c0001t0001g0031	2	NA18612.hp2 NA18955.hp2 NA18612.hp2 NA18955.hp2	intron_variant	MODIFIER	c.724+664G>A c.724+664G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961138
chr1:53961272	G G	A A	1	a0001c0001t0001g0021 a0001c0001t0001g0021	3	HG03491.hp1 HG03834.hp1 HG04115.hp1 HG03491.hp1 HG03834.hp1 HG04115.hp1	intron_variant	MODIFIER	c.725-762G>A c.725-762G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961272
chr1:53961368	C C	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.725-666C>T c.725-666C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961368
chr1:53961369	G G	A A	1	a0003c0004t0001g0056 a0003c0004t0001g0056	1	NA18994.hp1 NA18994.hp1	intron_variant	MODIFIER	c.725-665G>A c.725-665G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961369
chr1:53961410	C C	CA CA	11	a0001c0001t0001g0051 a0001c0001t0001g0103 a0001c0001t0001g0104 others(8): Show a0001c0001t0001g0051 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0049	24	HG00140.hp2 HG01192.hp1 HG01243.hp1 others(21): Show HG00140.hp2 HG01192.hp1 HG01243.hp1 HG02109.hp1 HG02145.hp1 HG02280.hp1 HG02451.hp1 HG02486.hp2 HG02572.hp2 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02886.hp1 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03195.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 NA18906.hp1 NA19081.hp2	intron_variant	MODIFIER	c.725-612dupA c.725-612dupA	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8	INFO_REALIGN_3_PRIME	chr1	53961410
chr1:53961623	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	NA19074.hp2 NA19074.hp2	intron_variant	MODIFIER	c.725-411G>A c.725-411G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961623
chr1:53961675	GGAGGTGA others(1): Show GGAGGTGAA	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.725-358_725-351del others(8): Show c.725-358_725-351delGAGGTGAA	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961675
chr1:53961712	T T	C C	1	a0001c0002t0002g0042 a0001c0002t0002g0042	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.725-322T>C c.725-322T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961712
chr1:53961992	A A	G G	3	a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	3	HG01884.hp1 HG02559.hp1 HG02723.hp2 HG01884.hp1 HG02559.hp1 HG02723.hp2	intron_variant	MODIFIER	c.725-42A>G c.725-42A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	5/8		chr1	53961992
chr1:53962433	C C	T T	2	a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0003t0002g0026 a0002c0003t0002g0037	5	HG01109.hp2 HG02922.hp1 HG03130.hp2 others(2): Show HG01109.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.927+24C>T c.927+24C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53962433
chr1:53962473	C C	A A	1	a0001c0001t0001g0070 a0001c0001t0001g0070	1	NA18949.hp1 NA18949.hp1	intron_variant	MODIFIER	c.927+64C>A c.927+64C>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53962473
chr1:53962589	C C	T T	1	a0001c0002t0002g0127 a0001c0002t0002g0127	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.927+180C>T c.927+180C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53962589
chr1:53962764	G G	A A	1	a0001c0002t0002g0143 a0001c0002t0002g0143	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.927+355G>A c.927+355G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53962764
chr1:53962767	G G	A A	2	a0001c0002t0004g0137 a0001c0002t0004g0138 a0001c0002t0004g0137 a0001c0002t0004g0138	2	NA19030.hp2 NA20752.hp2 NA19030.hp2 NA20752.hp2	intron_variant	MODIFIER	c.927+358G>A c.927+358G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53962767
chr1:53962771	G G	T T	1	a0001c0001t0001g0102 a0001c0001t0001g0102	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.927+362G>T c.927+362G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53962771
chr1:53962782	G G	A A	5	a0001c0002t0002g0035 a0001c0002t0002g0124 a0001c0002t0002g0125 others(2): Show a0001c0002t0002g0035 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127	6	HG01891.hp2 HG02257.hp2 NA18522.hp2 others(3): Show HG01891.hp2 HG02257.hp2 NA18522.hp2 NA18956.hp2 NA18984.hp1 NA20129.hp2	intron_variant	MODIFIER	c.927+373G>A c.927+373G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53962782
chr1:53962810	G G	T T	2	a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0015 a0001c0002t0002g0016	6	HG00639.hp2 HG02886.hp2 HG02970.hp2 others(3): Show HG00639.hp2 HG02886.hp2 HG02970.hp2 HG03516.hp2 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.927+401G>T c.927+401G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53962810
chr1:53962920	A A	G G	1	a0001c0001t0001g0029 a0001c0001t0001g0029	2	HG03491.hp2 HG03492.hp2 HG03491.hp2 HG03492.hp2	intron_variant	MODIFIER	c.927+511A>G c.927+511A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53962920
chr1:53963233	G G	A A	2	a0001c0002t0002g0025 a0001c0002t0002g0141 a0001c0002t0002g0025 a0001c0002t0002g0141	4	HG02280.hp2 HG02615.hp1 HG03471.hp2 others(1): Show HG02280.hp2 HG02615.hp1 HG03471.hp2 HG03540.hp1	intron_variant	MODIFIER	c.927+824G>A c.927+824G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53963233
chr1:53963331	A A	G G	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	NA18951.hp2 NA18951.hp2	intron_variant	MODIFIER	c.927+922A>G c.927+922A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53963331
chr1:53963753	CACTT CACTT	C C	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.927+1349_927+1352d others(6): Show c.927+1349_927+1352delACTT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53963753
chr1:53963798	C C	T T	1	a0001c0001t0001g0115 a0001c0001t0001g0115	1	HG02809.hp2 HG02809.hp2	intron_variant	MODIFIER	c.927+1389C>T c.927+1389C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53963798
chr1:53963947	A A	AC AC	68	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0011 others(65): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0045 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0093 a0001c0001t0001g0097 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0112 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0003g0001 a0001c0001t0005g0068 a0001c0001t0006g0001 a0001c0002t0002g0002 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0025 a0001c0002t0002g0123 a0001c0002t0002g0126 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0134 a0001c0002t0002g0139 a0002c0003t0002g0026 a0003c0004t0001g0028 a0004c0006t0001g0001 a0006c0008t0001g0098	167	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(164): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00423.hp1 HG00423.hp2 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG01070.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01243.hp2 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02040.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02132.hp1 HG02132.hp2 HG02155.hp1 HG02257.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp2 HG02486.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp2 HG02615.hp1 HG02630.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02735.hp1 HG02735.hp2 HG02818.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02976.hp2 HG03041.hp1 HG03130.hp1 HG03130.hp2 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04115.hp2 HG04204.hp1 HG04204.hp2 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18906.hp2 NA18944.hp1 NA18950.hp1 NA18951.hp1 NA18953.hp1 NA18953.hp2 NA18955.hp1 NA18955.hp2 NA18956.hp1 NA18957.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18964.hp2 NA18966.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp2 NA18973.hp1 NA18973.hp2 NA18979.hp1 NA18983.hp1 NA18983.hp2 NA18984.hp2 NA18986.hp1 NA18986.hp2 NA18987.hp1 NA18988.hp2 NA19000.hp1 NA19000.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19056.hp2 NA19063.hp2 NA19064.hp2 NA19065.hp1 NA19066.hp1 NA19066.hp2 NA19067.hp1 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19077.hp1 NA19077.hp2 NA19082.hp1 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.927+1548dupC c.927+1548dupC	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53963947
chr1:53963947	A A	ACC ACC	28	a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0044 others(25): Show a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0044 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0086 a0001c0001t0001g0094 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0105 a0001c0001t0001g0115 a0001c0002t0002g0008 a0001c0002t0002g0016 a0001c0002t0002g0024 a0001c0002t0002g0130 a0001c0002t0002g0133 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0140 a0002c0003t0002g0037 a0004c0006t0001g0004 a0005c0007t0001g0004	49	HG00280.hp2 HG00438.hp1 HG00438.hp2 others(46): Show HG00280.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp2 HG00642.hp1 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01070.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01433.hp2 HG01884.hp2 HG01891.hp1 HG01981.hp1 HG02055.hp2 HG02056.hp1 HG02080.hp1 HG02109.hp2 HG02135.hp2 HG02145.hp2 HG02155.hp2 HG02300.hp1 HG02602.hp1 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02970.hp2 HG03139.hp1 HG03139.hp2 HG03710.hp2 HG04184.hp1 HG04184.hp2 HG06807.hp2 NA18964.hp1 NA18966.hp1 NA18979.hp2 NA19043.hp2 NA19063.hp1 NA19067.hp2 NA19081.hp1 NA20129.hp1	intron_variant	MODIFIER	c.927+1547_927+1548d others(4): Show c.927+1547_927+1548dupCC	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53963947
chr1:53963947	AC AC	A A	11	a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0001t0001g0032 others(8): Show a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0001t0001g0032 a0001c0001t0001g0057 a0001c0001t0001g0091 a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0048 a0001c0002t0002g0042	28	HG00642.hp2 HG01243.hp1 HG02109.hp1 others(25): Show HG00642.hp2 HG01243.hp1 HG02109.hp1 HG02145.hp1 HG02280.hp1 HG02451.hp1 HG02486.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp2 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02717.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp1 HG02965.hp1 HG03098.hp2 HG03195.hp1 HG03209.hp1 HG03225.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 NA18949.hp2 NA18970.hp1 NA19086.hp1	intron_variant	MODIFIER	c.927+1548delC c.927+1548delC	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53963947
chr1:53964115	G G	A A	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	HG01981.hp1 HG01981.hp1	intron_variant	MODIFIER	c.927+1706G>A c.927+1706G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53964115
chr1:53964223	GT GT	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.927+1815delT c.927+1815delT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53964223
chr1:53964412	A A	G G	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.928-1884A>G c.928-1884A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53964412
chr1:53964414	T T	G G	2	a0001c0001t0001g0071 a0001c0001t0001g0075 a0001c0001t0001g0071 a0001c0001t0001g0075	2	NA19007.hp2 NA19067.hp2 NA19007.hp2 NA19067.hp2	intron_variant	MODIFIER	c.928-1882T>G c.928-1882T>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53964414
chr1:53964657	A A	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.928-1639A>G c.928-1639A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53964657
chr1:53964741	A A	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.928-1555A>G c.928-1555A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53964741
chr1:53964932	C C	T T	1	a0001c0001t0001g0073 a0001c0001t0001g0073	1	HG00673.hp2 HG00673.hp2	intron_variant	MODIFIER	c.928-1364C>T c.928-1364C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53964932
chr1:53964995	A A	ATTTTTTT others(3): Show ATTTTTTTTTT	1	a0002c0003t0002g0026 a0002c0003t0002g0026	3	HG02922.hp1 HG03130.hp2 HG03195.hp2 HG02922.hp1 HG03130.hp2 HG03195.hp2	intron_variant	MODIFIER	c.928-1299_928-1298i others(12): Show c.928-1299_928-1298insTTTTTTTTTT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53964995
chr1:53964995	A A	ATTTTTTT others(4): Show ATTTTTTTTTTT	1	a0002c0003t0002g0037 a0002c0003t0002g0037	2	HG01109.hp2 HG03139.hp2 HG01109.hp2 HG03139.hp2	intron_variant	MODIFIER	c.928-1299_928-1298i others(13): Show c.928-1299_928-1298insTTTTTTTTTTT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53964995
chr1:53964995	A A	ATTTTTTT others(5): Show ATTTTTTTTTTTT	1	a0001c0002t0002g0042 a0001c0002t0002g0042	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.928-1299_928-1298i others(14): Show c.928-1299_928-1298insTTTTTTTTTTTT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53964995
chr1:53964995	ATTGTTTT others(1): Show ATTGTTTTT	A A	3	a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	3	HG01884.hp1 HG02559.hp1 HG02723.hp2 HG01884.hp1 HG02559.hp1 HG02723.hp2	intron_variant	MODIFIER	c.928-1298_928-1291d others(10): Show c.928-1298_928-1291delGTTTTTTT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53964995
chr1:53964998	G G	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.928-1298G>T c.928-1298G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53964998
chr1:53964998	GTTTTTTT others(7): Show GTTTTTTTTTGTTTT	G G	9	a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0024 others(6): Show a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0036 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0140 a0001c0002t0004g0137 a0001c0002t0004g0138	18	HG00099.hp2 HG01070.hp1 HG01255.hp1 others(15): Show HG00099.hp2 HG01070.hp1 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG02109.hp2 HG02300.hp1 HG02738.hp1 HG02896.hp1 HG02897.hp2 HG02970.hp1 HG03130.hp1 HG06807.hp2 NA18522.hp1 NA19030.hp2 NA19043.hp2 NA20752.hp2	intron_variant	MODIFIER	c.928-1288_928-1275d others(16): Show c.928-1288_928-1275delGTTTTTTTTTTTTT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53964998
chr1:53965008	G G	GT GT	5	a0001c0001t0001g0033 a0001c0001t0001g0057 a0001c0001t0001g0078 others(2): Show a0001c0001t0001g0033 a0001c0001t0001g0057 a0001c0001t0001g0078 a0001c0001t0001g0115 a0006c0008t0001g0098	6	HG01167.hp1 HG02257.hp1 HG02809.hp2 others(3): Show HG01167.hp1 HG02257.hp1 HG02809.hp2 NA18949.hp2 NA18987.hp2 NA18988.hp1	intron_variant	MODIFIER	c.928-1274dupT c.928-1274dupT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53965008
chr1:53965008	G G	T T	11	a0001c0002t0001g0006 a0001c0002t0001g0046 a0001c0002t0001g0047 others(8): Show a0001c0002t0001g0006 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	22	HG01109.hp2 HG01884.hp1 HG02109.hp1 others(19): Show HG01109.hp2 HG01884.hp1 HG02109.hp1 HG02145.hp1 HG02451.hp1 HG02559.hp1 HG02572.hp1 HG02630.hp2 HG02647.hp2 HG02723.hp2 HG02922.hp1 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03195.hp2 HG03225.hp2 HG03471.hp1 HG03486.hp1 NA18906.hp1	intron_variant	MODIFIER	c.928-1288G>T c.928-1288G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965008
chr1:53965008	GT GT	G G	27	a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0002t0001g0007 others(24): Show a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0143	67	HG00280.hp1 HG00558.hp1 HG00639.hp2 others(64): Show HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00642.hp2 HG00673.hp1 HG01167.hp2 HG01243.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02132.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02486.hp2 HG02559.hp2 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp2 HG02717.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp2 HG03098.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03471.hp2 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 NA18522.hp2 NA18906.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19043.hp1 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2	intron_variant	MODIFIER	c.928-1274delT c.928-1274delT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53965008
chr1:53965009	T T	G G	5	a0001c0002t0001g0006 a0001c0002t0001g0046 a0001c0002t0001g0047 others(2): Show a0001c0002t0001g0006 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049	13	HG02109.hp1 HG02145.hp1 HG02451.hp1 others(10): Show HG02109.hp1 HG02145.hp1 HG02451.hp1 HG02630.hp2 HG02647.hp2 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03098.hp2 HG03225.hp2 HG03471.hp1 HG03486.hp1 NA18906.hp1	intron_variant	MODIFIER	c.928-1287T>G c.928-1287T>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965009
chr1:53965023	G G	T T	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.928-1273G>T c.928-1273G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965023
chr1:53965295	T T	G G	1	a0001c0002t0002g0036 a0001c0002t0002g0036	2	HG01256.hp2 HG01258.hp1 HG01256.hp2 HG01258.hp1	intron_variant	MODIFIER	c.928-1001T>G c.928-1001T>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965295
chr1:53965387	ATTAAAT ATTAAAT	A A	1	a0001c0002t0001g0006 a0001c0002t0001g0006	9	HG02109.hp1 HG02145.hp1 HG02451.hp1 others(6): Show HG02109.hp1 HG02145.hp1 HG02451.hp1 HG02630.hp2 HG02647.hp2 HG02965.hp1 HG03098.hp2 HG03471.hp1 HG03486.hp1	intron_variant	MODIFIER	c.928-903_928-898del others(6): Show c.928-903_928-898delTTTAAA	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53965387
chr1:53965447	G G	A A	1	a0001c0002t0002g0143 a0001c0002t0002g0143	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.928-849G>A c.928-849G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965447
chr1:53965484	C C	CT CT	8	a0001c0001t0001g0081 a0001c0002t0002g0042 a0001c0002t0002g0125 others(5): Show a0001c0001t0001g0081 a0001c0002t0002g0042 a0001c0002t0002g0125 a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	11	HG01109.hp2 HG01884.hp1 HG02055.hp2 others(8): Show HG01109.hp2 HG01884.hp1 HG02055.hp2 HG02559.hp1 HG02572.hp1 HG02723.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2 NA18956.hp2	intron_variant	MODIFIER	c.928-799dupT c.928-799dupT	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8	INFO_REALIGN_3_PRIME	chr1	53965484
chr1:53965621	A A	G G	11	a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0123 others(8): Show a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0123 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0139	36	HG00280.hp1 HG00558.hp1 HG00673.hp1 others(33): Show HG00280.hp1 HG00558.hp1 HG00673.hp1 HG01167.hp2 HG01884.hp2 HG02080.hp1 HG02132.hp1 HG02145.hp2 HG02451.hp2 HG02559.hp2 HG02683.hp2 HG02818.hp2 HG02895.hp2 HG02896.hp2 HG02922.hp2 HG02965.hp2 HG02976.hp2 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03516.hp1 HG03540.hp2 HG03710.hp2 NA18906.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA19043.hp1 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20300.hp2	intron_variant	MODIFIER	c.928-675A>G c.928-675A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965621
chr1:53965624	C C	T T	6	a0001c0002t0002g0035 a0001c0002t0002g0122 a0001c0002t0002g0124 others(3): Show a0001c0002t0002g0035 a0001c0002t0002g0122 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127	7	HG01891.hp2 HG02055.hp1 HG02257.hp2 others(4): Show HG01891.hp2 HG02055.hp1 HG02257.hp2 NA18522.hp2 NA18956.hp2 NA18984.hp1 NA20129.hp2	intron_variant	MODIFIER	c.928-672C>T c.928-672C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965624
chr1:53965627	C C	A A	2	a0001c0001t0001g0022 a0001c0001t0001g0072 a0001c0001t0001g0022 a0001c0001t0001g0072	4	NA18962.hp2 NA18987.hp1 NA18999.hp2 others(1): Show NA18962.hp2 NA18987.hp1 NA18999.hp2 NA19082.hp2	intron_variant	MODIFIER	c.928-669C>A c.928-669C>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965627
chr1:53965696	C C	T T	1	a0001c0002t0002g0036 a0001c0002t0002g0036	2	HG01256.hp2 HG01258.hp1 HG01256.hp2 HG01258.hp1	intron_variant	MODIFIER	c.928-600C>T c.928-600C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965696
chr1:53965721	C C	T T	6	a0001c0001t0001g0017 a0001c0001t0001g0033 a0001c0001t0001g0094 others(3): Show a0001c0001t0001g0017 a0001c0001t0001g0033 a0001c0001t0001g0094 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0099	9	HG00544.hp2 HG03490.hp1 HG03492.hp1 others(6): Show HG00544.hp2 HG03490.hp1 HG03492.hp1 NA18964.hp1 NA18970.hp2 NA18979.hp2 NA18987.hp2 NA18988.hp1 NA19065.hp2	intron_variant	MODIFIER	c.928-575C>T c.928-575C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965721
chr1:53965722	G G	A A	5	a0001c0002t0002g0035 a0001c0002t0002g0124 a0001c0002t0002g0125 others(2): Show a0001c0002t0002g0035 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127	6	HG01891.hp2 HG02257.hp2 NA18522.hp2 others(3): Show HG01891.hp2 HG02257.hp2 NA18522.hp2 NA18956.hp2 NA18984.hp1 NA20129.hp2	intron_variant	MODIFIER	c.928-574G>A c.928-574G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965722
chr1:53965783	C C	T T	2	a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0015 a0001c0002t0002g0016	6	HG00639.hp2 HG02886.hp2 HG02970.hp2 others(3): Show HG00639.hp2 HG02886.hp2 HG02970.hp2 HG03516.hp2 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.928-513C>T c.928-513C>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53965783
chr1:53966016	G G	A A	6	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 others(3): Show a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	9	HG01109.hp2 HG01884.hp1 HG02559.hp1 others(6): Show HG01109.hp2 HG01884.hp1 HG02559.hp1 HG02572.hp1 HG02723.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.928-280G>A c.928-280G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53966016
chr1:53966269	A A	G G	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.928-27A>G c.928-27A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	7/8		chr1	53966269
chr1:53966619	A A	G G	3	a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	3	HG01884.hp1 HG02559.hp1 HG02723.hp2 HG01884.hp1 HG02559.hp1 HG02723.hp2	intron_variant	MODIFIER	c.1012+239A>G c.1012+239A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53966619
chr1:53966773	AGG AGG	A A	3	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037	6	HG01109.hp2 HG02572.hp1 HG02922.hp1 others(3): Show HG01109.hp2 HG02572.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.1012+394_1012+395d others(4): Show c.1012+394_1012+395delGG	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53966773
chr1:53966808	G G	A A	1	a0001c0001t0001g0091 a0001c0001t0001g0091	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.1012+428G>A c.1012+428G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53966808
chr1:53966849	T T	C C	28	a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 others(25): Show a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0004g0137 a0001c0002t0004g0138	67	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(64): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01167.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp2 HG02257.hp2 HG02300.hp1 HG02451.hp2 HG02559.hp2 HG02683.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	intron_variant	MODIFIER	c.1012+469T>C c.1012+469T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53966849
chr1:53966893	G G	A A	1	a0001c0001t0001g0095 a0001c0001t0001g0095	1	NA19010.hp2 NA19010.hp2	intron_variant	MODIFIER	c.1012+513G>A c.1012+513G>A	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53966893
chr1:53967152	A A	G G	3	a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	3	HG01884.hp1 HG02559.hp1 HG02723.hp2 HG01884.hp1 HG02559.hp1 HG02723.hp2	intron_variant	MODIFIER	c.1013-513A>G c.1013-513A>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53967152
chr1:53967332	G G	T T	6	a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 others(3): Show a0001c0002t0002g0042 a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	9	HG01109.hp2 HG01884.hp1 HG02559.hp1 others(6): Show HG01109.hp2 HG01884.hp1 HG02559.hp1 HG02572.hp1 HG02723.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.1013-333G>T c.1013-333G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53967332
chr1:53967333	A A	T T	2	a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0003t0002g0026 a0002c0003t0002g0037	5	HG01109.hp2 HG02922.hp1 HG03130.hp2 others(2): Show HG01109.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.1013-332A>T c.1013-332A>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53967333
chr1:53967347	C C	G G	3	a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	3	HG01884.hp1 HG02559.hp1 HG02723.hp2 HG01884.hp1 HG02559.hp1 HG02723.hp2	intron_variant	MODIFIER	c.1013-318C>G c.1013-318C>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53967347
chr1:53967391	T T	G G	2	a0001c0002t0001g0006 a0001c0002t0001g0048 a0001c0002t0001g0006 a0001c0002t0001g0048	10	HG02109.hp1 HG02145.hp1 HG02451.hp1 others(7): Show HG02109.hp1 HG02145.hp1 HG02451.hp1 HG02630.hp2 HG02647.hp2 HG02965.hp1 HG03098.hp2 HG03225.hp2 HG03471.hp1 HG03486.hp1	intron_variant	MODIFIER	c.1013-274T>G c.1013-274T>G	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53967391
chr1:53967411	G G	T T	2	a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0001t0001g0018 a0001c0001t0001g0027	5	HG00642.hp2 HG02615.hp2 HG02717.hp1 others(2): Show HG00642.hp2 HG02615.hp2 HG02717.hp1 HG02895.hp1 HG02897.hp1	intron_variant	MODIFIER	c.1013-254G>T c.1013-254G>T	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53967411
chr1:53967646	T T	C C	5	a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0005t0001g0050 others(2): Show a0002c0003t0002g0026 a0002c0003t0002g0037 a0002c0005t0001g0050 a0002c0005t0001g0110 a0002c0005t0001g0111	8	HG01109.hp2 HG01884.hp1 HG02559.hp1 others(5): Show HG01109.hp2 HG01884.hp1 HG02559.hp1 HG02723.hp2 HG02922.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp2	intron_variant	MODIFIER	c.1013-19T>C c.1013-19T>C	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding	8/8		chr1	53967646

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🧬 JoGo Online Haplotype Explorer LRRC42_chr1_53941350_53973168

JoGo Local Haplotype Explorer (on iGV) LRRC42_chr1_53941350_53973168

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 6)

CCoding Level Haplotype Info (Total: 8)

TTranscript Level Haplotype Info (Total: 6)

GGenebody Level Haplotype Info (Total: 143)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 8)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 13)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 150)

Haplotype Details by Sample (Haploid Level) (Total: 316)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 5)

CCoding Level Variants (Synonymous Mutations) (Total: 2)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 5)

GGenebody Level Haplotype Variants (Intron) (Total: 222)

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Annotation (Repeats)

Annotation (SNP Array)