JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LTA_chr6_31567289_31579324	0/0	a0001	205	160	37	29	72	7	15	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	a0002	205	145	18	27	81	6	13	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/1	a0003	205	88	22	16	32	5	12	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	a0004	205	9	0	5	4	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	a0005	205	2	0	0	0	0	2	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	a0006	205	1	0	0	1	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	a0007	205	1	1	0	0	0	0	copy fasta	LTA	chr6	31567289	31579324
LTA_chr6_31567289_31579324	0/0	a0008	205	1	0	1	0	0	0	copy fasta	LTA	chr6	31567289	31579324
LTB4R2_chr14_24305140_24317038	1/1	a0001	358	375	67	67	177	16	46	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0002	358	10	10	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0003	358	8	8	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0004	358	7	0	0	7	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0005	358	2	2	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0006	358	1	1	0	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0007	358	1	0	0	1	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0008	358	1	0	0	1	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0009	358	1	0	1	0	0	0	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0010	276	1	0	0	0	0	1	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R2_chr14_24305140_24317038	0/0	a0011	358	1	0	0	0	0	1	copy fasta	LTB4R2	chr14	24305140	24317038
LTB4R_chr14_24306502_24323036	1/1	a0001	352	416	89	71	192	15	47	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	a0002	352	7	0	0	6	1	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	a0003	352	3	3	0	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	a0004	352	1	0	1	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	a0005	352	1	0	0	0	0	1	copy fasta	LTB4R	chr14	24306502	24323036
LTBP1_chr2_32941953_33404509	0/1	a0001	1721	140	49	38	23	4	25	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0002	1721	11	11	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0003	1721	3	0	0	2	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0004	1721	2	2	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0005	1721	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0006	1721	1	0	0	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0007	1721	1	0	0	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0008	1721	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0009	1721	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	1/0	a0010	1721	1	0	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0011	1721	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	a0012	1721	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP2_chr14_74493183_74617237	1/1	a0001	1821	213	66	49	62	13	21	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0002	1821	34	8	11	15	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0003	1821	13	0	0	10	0	3	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0004	1821	3	3	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0005	1821	3	3	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0006	1821	2	0	0	2	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0007	1821	2	1	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0008	1821	2	0	0	2	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0009	1821	2	0	0	0	0	2	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0010	1821	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0011	1821	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0012	1821	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0013	1821	1	0	0	0	1	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	a0014	1821	1	0	0	0	0	1	copy fasta	LTBP2	chr14	74493183	74617237