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geneid	4049
ensemblid	ENSG00000226979.9
hgncid	6709
symbol	LTA
name	lymphotoxin alpha
refseq_nuc	NM_000595.4
refseq_prot	NP_000586.2
ensembl_nuc	ENST00000418386.3
ensembl_prot	ENSP00000413450.2
mane_status	MANE Select
chr	chr6
start	31572289
end	31574324
strand	+
ver	v1.2
region	chr6:31572289-31574324
region5000	chr6:31567289-31579324
regionname0	LTA_chr6_31572289_31574324
regionname5000	LTA_chr6_31567289_31579324

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	205	160	37	29	72	7	15	56	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0002	0/0	205	145	18	27	81	6	13	68	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0003	0/1	205	88	22	16	32	5	12	21	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0004	0/0	205	9	0	5	4	0	0	3	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0005	0/0	205	2	0	0	0	0	2	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0006	0/0	205	1	0	0	1	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0007	0/0	205	1	1	0	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0008	0/0	205	1	0	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	618	153	36	29	66	7	15	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0002	0/0	618	145	18	27	81	6	13	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0003	0/1	618	88	22	16	32	5	12	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0004	0/0	618	9	0	5	4	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0005	0/0	618	5	0	0	5	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0006	0/0	618	2	0	0	0	0	2	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0007	0/0	618	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0008	0/0	618	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0009	0/0	618	1	0	1	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0010	0/0	618	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
c0011	0/0	618	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	799	151	36	25	71	4	15	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
t0002	0/0	799	143	18	27	81	5	12	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
t0003	0/1	799	98	20	21	37	5	14	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
t0004	0/0	799	9	1	4	1	3	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
t0005	0/0	799	3	2	1	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
t0006	0/0	799	2	0	0	0	1	1	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
t0007	0/0	799	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	160	38	29	72	6	15	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
g0002	0/0	140	18	27	77	6	12	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
g0003	0/1	91	18	22	32	4	14	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
g0004	0/0	5	3	0	1	1	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
g0005	0/0	4	0	0	3	0	1	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
g0006	0/0	4	0	0	4	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
g0007	0/0	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
g0008	0/0	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
g0009	0/0	1	0	0	0	1	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	618	153	36	29	66	7	15	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0001c0005	0/0	618	5	0	0	5	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0001c0010	0/0	618	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0001c0011	0/0	618	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0002c0002	0/0	618	145	18	27	81	6	13	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0003c0003	0/1	618	88	22	16	32	5	12	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0004c0004	0/0	618	9	0	5	4	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0005c0006	0/0	618	2	0	0	0	0	2	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0006c0007	0/0	618	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0007c0008	0/0	618	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0008c0009	0/0	618	1	0	1	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1416	143	34	25	65	4	15	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0001c0001t0004	0/0	1416	9	1	4	1	3	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0001c0001t0007	0/0	1416	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0001c0005t0001	0/0	1416	5	0	0	5	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0001c0010t0001	0/0	1416	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0001c0011t0001	0/0	1416	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0002c0002t0002	0/0	1416	143	18	27	81	5	12	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0002c0002t0006	0/0	1416	2	0	0	0	1	1	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0003c0003t0003	0/1	1416	85	20	15	32	5	12	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0003c0003t0005	0/0	1416	3	2	1	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0004c0004t0003	0/0	1416	9	0	5	4	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0005c0006t0003	0/0	1416	2	0	0	0	0	2	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0006c0007t0003	0/0	1416	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0007c0008t0001	0/0	1416	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324
a0008c0009t0003	0/0	1416	1	0	1	0	0	0	LTA_chr6_31567289_31579324	LTA	copy fasta	chr6	31567289	31579324

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	142	34	25	65	3	15	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0001c0001t0001g0009	0/0	1	0	0	0	1	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0001c0001t0004g0001	0/0	9	1	4	1	3	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0001c0001t0007g0001	0/0	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0001c0005t0001g0001	0/0	5	0	0	5	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0001c0010t0001g0001	0/0	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0001c0011t0001g0001	0/0	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0002c0002t0002g0002	0/0	138	18	27	77	5	11	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0002c0002t0002g0005	0/0	4	0	0	3	0	1	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0002c0002t0002g0007	0/0	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0002c0002t0006g0002	0/0	2	0	0	0	1	1	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0003c0003t0003g0003	0/1	75	16	15	27	4	12	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0003c0003t0003g0004	0/0	5	3	0	1	1	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0003c0003t0003g0006	0/0	4	0	0	4	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0003c0003t0003g0008	0/0	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0003c0003t0005g0003	0/0	3	2	1	0	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0004c0004t0003g0003	0/0	9	0	5	4	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0005c0006t0003g0003	0/0	2	0	0	0	0	2	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0006c0007t0003g0003	0/0	1	0	0	1	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0007c0008t0001g0001	0/0	1	1	0	0	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
a0008c0009t0003g0003	0/0	1	0	1	0	0	0	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0004	g0001	EUR	GBR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00140	hp1	a0003	c0003	t0003	g0003	EUR	GBR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00140	hp2	a0002	c0002	t0002	g0002	EUR	GBR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00280	hp2	a0001	c0001	t0001	g0001	EUR	FIN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00323	hp1	a0002	c0002	t0002	g0002	EUR	FIN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00323	hp2	a0001	c0001	t0001	g0009	EUR	FIN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00408	hp2	a0003	c0003	t0003	g0003	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00423	hp1	a0002	c0002	t0002	g0002	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00438	hp1	a0002	c0002	t0002	g0002	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00438	hp2	a0002	c0002	t0002	g0002	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00558	hp1	a0002	c0002	t0002	g0005	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00558	hp2	a0002	c0002	t0002	g0002	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00597	hp1	a0003	c0003	t0003	g0003	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00609	hp1	a0003	c0003	t0003	g0003	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00609	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00621	hp1	a0004	c0004	t0003	g0003	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00621	hp2	a0002	c0002	t0002	g0002	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00639	hp1	a0001	c0001	t0004	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00639	hp2	a0004	c0004	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00642	hp1	a0003	c0003	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00642	hp2	a0003	c0003	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00673	hp1	a0003	c0003	t0003	g0003	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00673	hp2	a0003	c0003	t0003	g0003	EAS	CHS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00733	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00733	hp2	a0003	c0003	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00735	hp1	a0003	c0003	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00738	hp2	a0001	c0001	t0004	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00741	hp1	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01069	hp2	a0001	c0001	t0004	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01070	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01071	hp1	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01071	hp2	a0001	c0001	t0004	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01074	hp1	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01081	hp1	a0003	c0003	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01081	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01099	hp1	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01099	hp2	a0004	c0004	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01106	hp1	a0008	c0009	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01106	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01167	hp1	a0003	c0003	t0005	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01167	hp2	a0003	c0003	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01168	hp1	a0003	c0003	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01168	hp2	a0004	c0004	t0003	g0003	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01175	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01192	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01243	hp2	a0002	c0002	t0002	g0002	AMR	PUR	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01255	hp2	a0002	c0002	t0002	g0002	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01256	hp1	a0002	c0002	t0002	g0002	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01256	hp2	a0003	c0003	t0003	g0003	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01257	hp1	a0003	c0003	t0003	g0003	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01257	hp2	a0002	c0002	t0002	g0002	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01258	hp1	a0003	c0003	t0003	g0003	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01258	hp2	a0002	c0002	t0002	g0002	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01261	hp1	a0002	c0002	t0002	g0002	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01261	hp2	a0003	c0003	t0003	g0003	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01346	hp2	a0002	c0002	t0002	g0002	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01361	hp2	a0002	c0002	t0002	g0002	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01433	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01515	hp1	a0003	c0003	t0003	g0003	EUR	IBS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01515	hp2	a0001	c0001	t0004	g0001	EUR	IBS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01516	hp1	a0002	c0002	t0002	g0002	EUR	IBS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01516	hp2	a0002	c0002	t0006	g0002	EUR	IBS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01517	hp1	a0001	c0001	t0004	g0001	EUR	IBS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01517	hp2	a0002	c0002	t0002	g0002	EUR	IBS	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01891	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01891	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01928	hp1	a0002	c0002	t0002	g0002	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01928	hp2	a0002	c0002	t0002	g0002	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01934	hp2	a0003	c0003	t0003	g0003	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01943	hp1	a0002	c0002	t0002	g0002	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01943	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01952	hp1	a0002	c0002	t0002	g0002	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01952	hp2	a0003	c0003	t0003	g0003	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01975	hp1	a0002	c0002	t0002	g0002	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01981	hp2	a0002	c0002	t0002	g0002	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01993	hp1	a0004	c0004	t0003	g0003	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02027	hp2	a0003	c0003	t0003	g0003	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02040	hp2	a0002	c0002	t0002	g0002	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02055	hp1	a0002	c0002	t0002	g0002	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02055	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02056	hp2	a0003	c0003	t0003	g0003	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02071	hp1	a0002	c0002	t0002	g0002	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02071	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02080	hp1	a0003	c0003	t0003	g0003	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02083	hp1	a0003	c0003	t0003	g0003	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02083	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02129	hp1	a0006	c0007	t0003	g0003	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02129	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02132	hp2	a0002	c0002	t0002	g0002	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02135	hp1	a0003	c0003	t0003	g0003	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02148	hp2	a0003	c0003	t0003	g0003	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02165	hp2	a0002	c0002	t0002	g0002	EAS	CDX	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02257	hp2	a0001	c0001	t0004	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02258	hp1	a0002	c0002	t0002	g0002	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02258	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02273	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02273	hp2	a0002	c0002	t0002	g0002	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02280	hp1	a0002	c0002	t0002	g0002	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02280	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02293	hp1	a0002	c0002	t0002	g0002	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02300	hp1	a0003	c0003	t0003	g0003	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02300	hp2	a0002	c0002	t0002	g0002	AMR	PEL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02451	hp1	a0003	c0003	t0003	g0003	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02523	hp1	a0002	c0002	t0002	g0002	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02523	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02572	hp1	a0003	c0003	t0003	g0003	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02572	hp2	a0002	c0002	t0002	g0002	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02615	hp1	a0002	c0002	t0002	g0002	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02615	hp2	a0002	c0002	t0002	g0002	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02622	hp1	a0002	c0002	t0002	g0002	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02630	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02630	hp2	a0002	c0002	t0002	g0002	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02683	hp2	a0002	c0002	t0002	g0002	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02698	hp1	a0003	c0003	t0003	g0003	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02698	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02717	hp1	a0003	c0003	t0003	g0008	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02717	hp2	a0002	c0002	t0002	g0002	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02723	hp1	a0002	c0002	t0002	g0002	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02723	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02738	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02818	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02818	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02896	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02896	hp2	a0003	c0003	t0005	g0003	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02897	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02897	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02922	hp1	a0003	c0003	t0003	g0004	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02922	hp2	a0003	c0003	t0003	g0003	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02965	hp1	a0007	c0008	t0001	g0001	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02965	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02970	hp1	a0002	c0002	t0002	g0002	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02970	hp2	a0003	c0003	t0003	g0003	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02976	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02976	hp2	a0003	c0003	t0003	g0003	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03017	hp1	a0002	c0002	t0002	g0002	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03017	hp2	a0002	c0002	t0002	g0002	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03098	hp2	a0003	c0003	t0003	g0003	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03130	hp1	a0002	c0002	t0002	g0002	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03130	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03139	hp2	a0002	c0002	t0002	g0002	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03195	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03239	hp2	a0003	c0003	t0003	g0003	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03453	hp1	a0003	c0003	t0003	g0003	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03453	hp2	a0003	c0003	t0003	g0004	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03486	hp2	a0001	c0001	t0007	g0001	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03490	hp1	a0003	c0003	t0003	g0003	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03490	hp2	a0005	c0006	t0003	g0003	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03491	hp1	a0002	c0002	t0002	g0002	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03492	hp2	a0005	c0006	t0003	g0003	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03540	hp1	a0003	c0003	t0003	g0003	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03540	hp2	a0003	c0003	t0003	g0004	AFR	GWD	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03579	hp2	a0002	c0002	t0002	g0002	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03654	hp2	a0002	c0002	t0006	g0002	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03669	hp1	a0002	c0002	t0002	g0002	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03688	hp2	a0003	c0003	t0003	g0003	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03704	hp1	a0002	c0002	t0002	g0002	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03704	hp2	a0003	c0003	t0003	g0003	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03710	hp1	a0002	c0002	t0002	g0002	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03834	hp1	a0002	c0002	t0002	g0005	SAS	BEB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03834	hp2	a0002	c0002	t0002	g0002	SAS	BEB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03927	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03927	hp2	a0003	c0003	t0003	g0003	SAS	BEB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04115	hp1	a0003	c0003	t0003	g0003	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04115	hp2	a0003	c0003	t0003	g0003	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04184	hp1	a0003	c0003	t0003	g0003	SAS	BEB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04184	hp2	a0003	c0003	t0003	g0003	SAS	BEB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04199	hp2	a0002	c0002	t0002	g0002	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04204	hp1	a0002	c0002	t0002	g0002	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04204	hp2	a0003	c0003	t0003	g0003	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04228	hp1	a0003	c0003	t0003	g0003	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG04228	hp2	a0002	c0002	t0002	g0002	SAS	STU	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18522	hp1	a0003	c0003	t0003	g0003	AFR	YRI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18522	hp2	a0001	c0001	t0001	g0001	AFR	YRI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18612	hp1	a0002	c0002	t0002	g0005	EAS	CHB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18612	hp2	a0003	c0003	t0003	g0003	EAS	CHB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18747	hp1	a0002	c0002	t0002	g0002	EAS	CHB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18747	hp2	a0001	c0001	t0001	g0001	EAS	CHB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18906	hp1	a0001	c0001	t0001	g0001	AFR	YRI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18906	hp2	a0001	c0001	t0001	g0001	AFR	YRI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18939	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18939	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18940	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18940	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18942	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18943	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18943	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18946	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18946	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18949	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18949	hp2	a0001	c0011	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18950	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18950	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18951	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18952	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18952	hp2	a0004	c0004	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18953	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18953	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18956	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18956	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18960	hp1	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18960	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18961	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18961	hp2	a0004	c0004	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18962	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18962	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18963	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18963	hp2	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18964	hp1	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18966	hp1	a0001	c0005	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18966	hp2	a0001	c0005	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18967	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18968	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18969	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18969	hp2	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18971	hp1	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18971	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18972	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18972	hp2	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18974	hp1	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18974	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18975	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18978	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18978	hp2	a0001	c0001	t0004	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18979	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18980	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18981	hp1	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18981	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18982	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18983	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18983	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18984	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18985	hp1	a0004	c0004	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18985	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18986	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18987	hp1	a0003	c0003	t0003	g0006	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18987	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18988	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18988	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18989	hp2	a0003	c0003	t0003	g0006	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18991	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18991	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18992	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18992	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18993	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18994	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18995	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18997	hp1	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18997	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18998	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18999	hp2	a0003	c0003	t0003	g0006	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19000	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19000	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19002	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19002	hp2	a0002	c0002	t0002	g0005	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19003	hp2	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19004	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19004	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19005	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19007	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19009	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19009	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19011	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19030	hp1	a0001	c0001	t0001	g0001	AFR	LWK	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19030	hp2	a0003	c0003	t0003	g0003	AFR	LWK	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19054	hp1	a0001	c0005	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19054	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19055	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19055	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19056	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19057	hp1	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19057	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19058	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19058	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19062	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19064	hp2	a0003	c0003	t0003	g0004	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19065	hp1	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19066	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19066	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19067	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19070	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19074	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19074	hp2	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19075	hp1	a0001	c0005	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19075	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19079	hp2	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19080	hp2	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19081	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19081	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19083	hp1	a0002	c0002	t0002	g0007	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19083	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19085	hp2	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19086	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19086	hp2	a0003	c0003	t0003	g0006	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19087	hp1	a0002	c0002	t0002	g0002	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19087	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19091	hp2	a0001	c0005	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19240	hp1	a0001	c0001	t0001	g0001	AFR	YRI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA19240	hp2	a0002	c0002	t0002	g0002	AFR	YRI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20129	hp1	a0003	c0003	t0003	g0003	AFR	ASW	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20129	hp2	a0003	c0003	t0003	g0003	AFR	ASW	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20752	hp1	a0002	c0002	t0002	g0002	EUR	TSI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20752	hp2	a0003	c0003	t0003	g0003	EUR	TSI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20805	hp1	a0003	c0003	t0003	g0003	EUR	TSI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20805	hp2	a0003	c0003	t0003	g0004	EUR	TSI	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20905	hp2	a0001	c0001	t0001	g0001	SAS	GIH	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01123	hp1	a0004	c0004	t0003	g0003	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG01123	hp2	a0002	c0002	t0002	g0002	AMR	CLM	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02109	hp1	a0003	c0003	t0003	g0003	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02109	hp2	a0001	c0010	t0001	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02486	hp1	a0003	c0003	t0005	g0003	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02486	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02559	hp1	a0003	c0003	t0003	g0003	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG02559	hp2	a0002	c0002	t0002	g0002	AFR	ACB	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG03471	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG06807	hp1	a0003	c0003	t0003	g0003	AFR	USA	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
HG06807	hp2	a0002	c0002	t0002	g0002	AFR	USA	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18955	hp1	a0003	c0003	t0003	g0003	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA18955	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA20300	hp2	a0002	c0002	t0002	g0002	AFR	USA	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA21309	hp1	a0003	c0003	t0003	g0003	AFR	LWK	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324
homoSapiens_chm13v2	hp1	a0003	c0003	t0003	g0003	REF	REF	LTA_chr6_31567289_31579324	LTA	chr6	31567289	31579324

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr6:31572759	G G	A A	1	a0006 a0006	1	HG02129.hp1 HG02129.hp1	missense_variant	MODERATE	c.17G>A c.17G>A	p.Arg6His p.Arg6His	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	2/4	184/1416	17/618	6/205	chr6	31572759
chr6:31572779	T T	C C	6	a0003 a0004 a0005 others(3): Show a0003 a0004 a0005 a0006 a0007 a0008	102	HG00140.hp1 HG00408.hp2 HG00597.hp1 others(99): Show HG00140.hp1 HG00408.hp2 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00735.hp1 HG01081.hp1 HG01099.hp2 HG01106.hp1 HG01123.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01261.hp2 HG01515.hp1 HG01934.hp2 HG01952.hp2 HG01993.hp1 HG02027.hp2 HG02056.hp2 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02135.hp1 HG02148.hp2 HG02300.hp1 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02698.hp1 HG02717.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp2 HG03098.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03688.hp2 HG03704.hp2 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp2 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp2 NA18952.hp2 NA18955.hp1 NA18960.hp1 NA18961.hp2 NA18963.hp2 NA18964.hp1 NA18969.hp2 NA18971.hp1 NA18972.hp2 NA18974.hp1 NA18981.hp1 NA18985.hp1 NA18987.hp1 NA18989.hp2 NA18997.hp1 NA18999.hp2 NA19003.hp2 NA19030.hp2 NA19057.hp1 NA19064.hp2 NA19065.hp1 NA19074.hp2 NA19079.hp2 NA19080.hp2 NA19086.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.37T>C c.37T>C	p.Cys13Arg p.Cys13Arg	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	2/4	204/1416	37/618	13/205	chr6	31572779
chr6:31572980	A A	C C	1	a0004 a0004	9	HG00621.hp1 HG00639.hp2 HG01099.hp2 others(6): Show HG00621.hp1 HG00639.hp2 HG01099.hp2 HG01123.hp1 HG01168.hp2 HG01993.hp1 NA18952.hp2 NA18961.hp2 NA18985.hp1	missense_variant	MODERATE	c.152A>C c.152A>C	p.His51Pro p.His51Pro	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	3/4	319/1416	152/618	51/205	chr6	31572980
chr6:31573007	C C	A A	2	a0001 a0007 a0001 a0007	161	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(158): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00423.hp2 HG00597.hp2 HG00609.hp2 HG00639.hp1 HG00733.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01346.hp1 HG01361.hp1 HG01433.hp1 HG01433.hp2 HG01515.hp2 HG01517.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp2 HG02056.hp1 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp2 HG02129.hp2 HG02132.hp1 HG02135.hp2 HG02148.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02273.hp1 HG02280.hp2 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02622.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp2 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03710.hp2 HG03927.hp1 HG04199.hp1 NA18522.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18940.hp2 NA18942.hp1 NA18943.hp2 NA18949.hp2 NA18951.hp2 NA18955.hp2 NA18956.hp1 NA18963.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18968.hp2 NA18971.hp2 NA18975.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18982.hp1 NA18983.hp2 NA18984.hp1 NA18986.hp1 NA18987.hp2 NA18989.hp1 NA18992.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp1 NA18999.hp1 NA19002.hp1 NA19003.hp1 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19009.hp2 NA19011.hp2 NA19030.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19080.hp1 NA19083.hp2 NA19085.hp1 NA19087.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA20300.hp1 NA20905.hp1 NA20905.hp2 NA21309.hp2	missense_variant	MODERATE	c.179C>A c.179C>A	p.Thr60Asn p.Thr60Asn	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	3/4	346/1416	179/618	60/205	chr6	31573007
chr6:31573460	C C	G G	1	a0005 a0005	2	HG03490.hp2 HG03492.hp2 HG03490.hp2 HG03492.hp2	missense_variant	MODERATE	c.385C>G c.385C>G	p.Leu129Val p.Leu129Val	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	4/4	552/1416	385/618	129/205	chr6	31573460
chr6:31573497	A A	C C	1	a0008 a0008	1	HG01106.hp1 HG01106.hp1	missense_variant	MODERATE	c.422A>C c.422A>C	p.Gln141Pro p.Gln141Pro	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	4/4	589/1416	422/618	141/205	chr6	31573497

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr6:31572766	C C	T T	1	a0001c0011 a0001c0011	1	NA18949.hp2 NA18949.hp2	synonymous_variant	LOW	c.24C>T c.24C>T	p.Phe8Phe p.Phe8Phe	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	2/4	191/1416	24/618	8/205	chr6	31572766
chr6:31572945	C C	T T	1	a0001c0010 a0001c0010	1	HG02109.hp2 HG02109.hp2	synonymous_variant	LOW	c.117C>T c.117C>T	p.Gly39Gly p.Gly39Gly	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	3/4	284/1416	117/618	39/205	chr6	31572945
chr6:31572984	C C	T T	1	a0001c0005 a0001c0005	5	NA18966.hp1 NA18966.hp2 NA19054.hp1 others(2): Show NA18966.hp1 NA18966.hp2 NA19054.hp1 NA19075.hp1 NA19091.hp2	synonymous_variant	LOW	c.156C>T c.156C>T	p.Pro52Pro p.Pro52Pro	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	3/4	323/1416	156/618	52/205	chr6	31572984

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr6:31572294	G G	A A	7	a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 a0001c0005t0001 a0001c0010t0001 a0001c0011t0001 a0007c0008t0001	161	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(158): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00423.hp2 HG00597.hp2 HG00609.hp2 HG00639.hp1 HG00733.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01346.hp1 HG01361.hp1 HG01433.hp1 HG01433.hp2 HG01515.hp2 HG01517.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp2 HG02056.hp1 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp2 HG02129.hp2 HG02132.hp1 HG02135.hp2 HG02148.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02273.hp1 HG02280.hp2 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02622.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp2 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03710.hp2 HG03927.hp1 HG04199.hp1 NA18522.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18940.hp2 NA18942.hp1 NA18943.hp2 NA18949.hp2 NA18951.hp2 NA18955.hp2 NA18956.hp1 NA18963.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18968.hp2 NA18971.hp2 NA18975.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18982.hp1 NA18983.hp2 NA18984.hp1 NA18986.hp1 NA18987.hp2 NA18989.hp1 NA18992.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp1 NA18999.hp1 NA19002.hp1 NA19003.hp1 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19009.hp2 NA19011.hp2 NA19030.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19080.hp1 NA19083.hp2 NA19085.hp1 NA19087.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA20300.hp1 NA20905.hp1 NA20905.hp2 NA21309.hp2	5_prime_UTR_variant	MODIFIER	c.-162G>A c.-162G>A	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	1/4	449	chr6	31572294
chr6:31572364	A A	C C	13	a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 others(10): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 a0001c0005t0001 a0001c0010t0001 a0001c0011t0001 a0003c0003t0003 a0003c0003t0005 a0004c0004t0003 a0005c0006t0003 a0006c0007t0003 a0007c0008t0001 a0008c0009t0003	262	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(259): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01081.hp1 HG01099.hp2 HG01106.hp1 HG01123.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp1 HG01433.hp1 HG01433.hp2 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp2 HG01952.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02135.hp1 HG02135.hp2 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02273.hp1 HG02280.hp2 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03688.hp2 HG03704.hp2 HG03710.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp2 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18612.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18940.hp2 NA18942.hp1 NA18943.hp2 NA18949.hp2 NA18951.hp2 NA18952.hp2 NA18955.hp1 NA18955.hp2 NA18956.hp1 NA18960.hp1 NA18961.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18968.hp2 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp2 NA18974.hp1 NA18975.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18982.hp1 NA18983.hp2 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18987.hp1 NA18987.hp2 NA18989.hp1 NA18989.hp2 NA18992.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19002.hp1 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19009.hp2 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19062.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19070.hp1 NA19074.hp2 NA19075.hp1 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19083.hp2 NA19085.hp1 NA19086.hp2 NA19087.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	5_prime_UTR_variant	MODIFIER	c.-92A>C c.-92A>C	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	1/4	379	chr6	31572364
chr6:31572365	G G	A A	1	a0001c0001t0004 a0001c0001t0004	9	HG00099.hp1 HG00639.hp1 HG00738.hp2 others(6): Show HG00099.hp1 HG00639.hp1 HG00738.hp2 HG01069.hp2 HG01071.hp2 HG01515.hp2 HG01517.hp1 HG02257.hp2 NA18978.hp2	5_prime_UTR_variant	MODIFIER	c.-91G>A c.-91G>A	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	1/4	378	chr6	31572365
chr6:31574002	A A	G G	1	a0003c0003t0005 a0003c0003t0005	3	HG01167.hp1 HG02486.hp1 HG02896.hp2 HG01167.hp1 HG02486.hp1 HG02896.hp2	3_prime_UTR_variant	MODIFIER	c.309A>G c.309A>G	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	4/4	309	chr6	31574002
chr6:31574071	T T	A A	1	a0002c0002t0006 a0002c0002t0006	2	HG01516.hp2 HG03654.hp2 HG01516.hp2 HG03654.hp2	3_prime_UTR_variant	MODIFIER	c.378T>A c.378T>A	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	4/4	378	chr6	31574071
chr6:31574319	C C	A A	1	a0001c0001t0007 a0001c0001t0007	1	HG03486.hp2 HG03486.hp2	3_prime_UTR_variant	MODIFIER	c.626C>A c.626C>A	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	4/4	626	chr6	31574319
chr6:31574320	T T	A A	1	a0001c0001t0007 a0001c0001t0007	1	HG03486.hp2 HG03486.hp2	3_prime_UTR_variant	MODIFIER	c.627T>A c.627T>A	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	4/4	627	chr6	31574320

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr6:31572536	A A	G G	8	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0004g0001 others(5): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0004g0001 a0001c0001t0007g0001 a0001c0005t0001g0001 a0001c0010t0001g0001 a0001c0011t0001g0001 a0007c0008t0001g0001	161	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(158): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00423.hp2 HG00597.hp2 HG00609.hp2 HG00639.hp1 HG00733.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01346.hp1 HG01361.hp1 HG01433.hp1 HG01433.hp2 HG01515.hp2 HG01517.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01943.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp2 HG02056.hp1 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp2 HG02129.hp2 HG02132.hp1 HG02135.hp2 HG02148.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02273.hp1 HG02280.hp2 HG02293.hp2 HG02451.hp2 HG02486.hp2 HG02523.hp2 HG02622.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp2 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03710.hp2 HG03927.hp1 HG04199.hp1 NA18522.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18940.hp2 NA18942.hp1 NA18943.hp2 NA18949.hp2 NA18951.hp2 NA18955.hp2 NA18956.hp1 NA18963.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18968.hp2 NA18971.hp2 NA18975.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18982.hp1 NA18983.hp2 NA18984.hp1 NA18986.hp1 NA18987.hp2 NA18989.hp1 NA18992.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp1 NA18999.hp1 NA19002.hp1 NA19003.hp1 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19009.hp2 NA19011.hp2 NA19030.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19080.hp1 NA19083.hp2 NA19085.hp1 NA19087.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA20300.hp1 NA20905.hp1 NA20905.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-10+90A>G c.-10+90A>G	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	1/3		chr6	31572536
chr6:31572652	C C	G G	17	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0004g0001 others(14): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0004g0001 a0001c0001t0007g0001 a0001c0005t0001g0001 a0001c0010t0001g0001 a0001c0011t0001g0001 a0003c0003t0003g0003 a0003c0003t0003g0004 a0003c0003t0003g0006 a0003c0003t0003g0008 a0003c0003t0005g0003 a0004c0004t0003g0003 a0005c0006t0003g0003 a0006c0007t0003g0003 a0007c0008t0001g0001 a0008c0009t0003g0003	262	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(259): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01081.hp1 HG01099.hp2 HG01106.hp1 HG01123.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01361.hp1 HG01433.hp1 HG01433.hp2 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp2 HG01952.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02135.hp1 HG02135.hp2 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02273.hp1 HG02280.hp2 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02622.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02723.hp2 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03688.hp2 HG03704.hp2 HG03710.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp2 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18612.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18940.hp2 NA18942.hp1 NA18943.hp2 NA18949.hp2 NA18951.hp2 NA18952.hp2 NA18955.hp1 NA18955.hp2 NA18956.hp1 NA18960.hp1 NA18961.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18968.hp2 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp2 NA18974.hp1 NA18975.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18982.hp1 NA18983.hp2 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18987.hp1 NA18987.hp2 NA18989.hp1 NA18989.hp2 NA18992.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19002.hp1 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19009.hp2 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19062.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19070.hp1 NA19074.hp2 NA19075.hp1 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19083.hp2 NA19085.hp1 NA19086.hp2 NA19087.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-9-82C>G c.-9-82C>G	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	1/3		chr6	31572652
chr6:31572692	G G	A A	1	a0003c0003t0003g0008 a0003c0003t0003g0008	1	HG02717.hp1 HG02717.hp1	intron_variant	MODIFIER	c.-9-42G>A c.-9-42G>A	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	1/3		chr6	31572692
chr6:31572704	G G	GTC GTC	10	a0002c0002t0002g0005 a0003c0003t0003g0003 a0003c0003t0003g0004 others(7): Show a0002c0002t0002g0005 a0003c0003t0003g0003 a0003c0003t0003g0004 a0003c0003t0003g0006 a0003c0003t0003g0008 a0003c0003t0005g0003 a0004c0004t0003g0003 a0005c0006t0003g0003 a0006c0007t0003g0003 a0008c0009t0003g0003	105	HG00140.hp1 HG00408.hp2 HG00558.hp1 others(102): Show HG00140.hp1 HG00408.hp2 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00735.hp1 HG01081.hp1 HG01099.hp2 HG01106.hp1 HG01123.hp1 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01261.hp2 HG01515.hp1 HG01934.hp2 HG01952.hp2 HG01993.hp1 HG02027.hp2 HG02056.hp2 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02135.hp1 HG02148.hp2 HG02300.hp1 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02698.hp1 HG02717.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG02976.hp2 HG03098.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03688.hp2 HG03704.hp2 HG03834.hp1 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp2 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18952.hp2 NA18955.hp1 NA18960.hp1 NA18961.hp2 NA18963.hp2 NA18964.hp1 NA18969.hp2 NA18971.hp1 NA18972.hp2 NA18974.hp1 NA18981.hp1 NA18985.hp1 NA18987.hp1 NA18989.hp2 NA18997.hp1 NA18999.hp2 NA19002.hp2 NA19003.hp2 NA19030.hp2 NA19057.hp1 NA19064.hp2 NA19065.hp1 NA19074.hp2 NA19079.hp2 NA19080.hp2 NA19086.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-9-12_-9-11dupCT c.-9-12_-9-11dupCT	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr6	31572704
chr6:31572916	G G	C C	1	a0003c0003t0003g0004 a0003c0003t0003g0004	5	HG02922.hp1 HG03453.hp2 HG03540.hp2 others(2): Show HG02922.hp1 HG03453.hp2 HG03540.hp2 NA19064.hp2 NA20805.hp2	intron_variant	MODIFIER	c.100-12G>C c.100-12G>C	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	2/3		chr6	31572916
chr6:31573137	T T	TA TA	2	a0002c0002t0002g0007 a0003c0003t0003g0006 a0002c0002t0002g0007 a0003c0003t0003g0006	5	NA18987.hp1 NA18989.hp2 NA18999.hp2 others(2): Show NA18987.hp1 NA18989.hp2 NA18999.hp2 NA19083.hp1 NA19086.hp2	intron_variant	MODIFIER	c.205+112dupA c.205+112dupA	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	3/3	INFO_REALIGN_3_PRIME	chr6	31573137
chr6:31573180	T T	C C	1	a0001c0001t0001g0009 a0001c0001t0001g0009	1	HG00323.hp2 HG00323.hp2	intron_variant	MODIFIER	c.206-101T>C c.206-101T>C	LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding	3/3		chr6	31573180

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🧬 JoGo Online Haplotype Explorer LTA_chr6_31567289_31579324

JoGo Local Haplotype Explorer (on iGV) LTA_chr6_31567289_31579324

Translation Multiple Alignment View

ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 8)

CCoding Level Haplotype Info (Total: 11)

TTranscript Level Haplotype Info (Total: 7)

GGenebody Level Haplotype Info (Total: 9)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 11)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 15)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 21)

Haplotype Details by Sample (Haploid Level) (Total: 407)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 6)

CCoding Level Variants (Synonymous Mutations) (Total: 3)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 7)

GGenebody Level Haplotype Variants (Intron) (Total: 7)

External Link

Annotation (Repeats)

Annotation (SNP Array)