JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAB21L4_chr2_240881048_240901156	0/0	a0003	447	12	10	2	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0004	447	6	5	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	1/0	a0005	447	5	1	0	0	1	2	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0006	447	4	0	1	3	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0007	447	3	3	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0008	447	3	3	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0009	447	3	0	0	3	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0010	447	3	3	0	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0011	447	2	1	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0012	447	1	0	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0013	447	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0014	447	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0015	447	1	0	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0016	447	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0017	447	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0018	447	1	0	1	0	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	a0019	447	1	0	0	1	0	0	copy fasta	MAB21L4	chr2	240881048	240901156
MACC1_chr7_20129655_20222384	1/1	a0001	852	83	39	15	13	4	10	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0002	852	79	11	16	39	3	10	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0003	852	58	14	16	13	5	10	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0004	852	33	2	3	19	1	8	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0005	852	16	0	8	6	1	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0006	852	10	8	2	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0007	852	8	5	2	0	0	1	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0008	852	4	0	0	4	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0009	852	3	3	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0010	852	3	3	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0011	852	2	2	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0012	852	2	0	0	2	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0013	852	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0014	852	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0015	852	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0016	852	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0017	852	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0018	852	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0019	852	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0020	852	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0021	852	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0022	852	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0023	852	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0024	852	1	1	0	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0025	852	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0026	852	1	0	0	1	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACC1_chr7_20129655_20222384	0/0	a0027	852	1	0	1	0	0	0	copy fasta	MACC1	chr7	20129655	20222384
MACF1_chr1_39199695_39492138	0/0	a0001	7555	61	12	11	33	1	4	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0002	7555	39	17	3	16	2	1	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0003	7555	38	2	10	21	1	4	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/1	a0004	7555	15	6	3	0	2	3	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0005	7555	11	10	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	a0006	7555	10	5	1	0	0	4	copy fasta	MACF1	chr1	39199695	39492138