JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAGED2_chrX_54802745_54821015	0/0	a0003	606	3	0	0	3	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	a0004	453	1	0	1	0	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	a0005	487	1	0	0	1	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	a0006	574	1	0	0	1	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED2_chrX_54802745_54821015	0/0	a0007	606	1	0	0	1	0	0	copy fasta	MAGED2	chrX	54802745	54821015
MAGED4B_chrX_52056827_52074183	0/0	a0001	741	206	53	37	85	11	20	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	a0002	418	2	0	0	2	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	a0003	741	1	1	0	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	a0004	741	1	0	1	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	a0005	741	1	1	0	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	a0006	582	1	0	0	1	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	a0007	741	1	0	0	1	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	a0008	321	1	0	0	1	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	a0009	106	1	0	0	1	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	a0010	106	1	0	1	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4_chrX_52179888_52197268	0/0	a0001	741	199	50	42	85	4	18	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0002	418	6	1	2	1	0	2	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0003	741	4	3	1	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0004	741	3	0	0	3	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0005	15	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0006	381	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0007	741	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0008	631	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0009	418	1	0	1	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0010	233	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0011	133	1	0	0	0	0	1	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	a0012	741	1	1	0	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGEE1_chrX_76422710_76436342	0/0	a0000	0	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	1/1	a0001	957	220	31	42	107	9	29	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0002	957	43	29	7	6	1	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0003	957	12	11	1	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0004	957	3	0	1	0	1	1	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0005	957	2	1	1	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0006	957	2	2	0	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0007	61	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0008	957	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0009	957	1	1	0	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0010	957	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0011	957	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0012	957	1	0	0	0	0	1	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0013	337	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0014	277	1	0	0	0	0	1	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	a0015	957	1	1	0	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE2_chrX_75777987_75790254	1/1	a0001	523	151	74	38	5	10	22	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	a0002	119	121	2	16	92	1	10	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	a0003	119	1	0	0	1	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	a0004	523	1	0	0	1	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	a0005	523	1	1	0	0	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	a0006	523	1	1	0	0	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	a0007	24	1	0	0	1	0	0	copy fasta	MAGEE2	chrX	75777987	75790254