JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MBIP_chr14_36293564_36325637	0/1	a0001	344	226	26	45	109	12	33	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	a0002	344	56	51	5	0	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	1/0	a0003	344	29	11	4	10	2	1	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	a0004	80	1	0	0	1	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBL2_chr10_52760380_52777784	0/0	a0000	0	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	1/1	a0001	248	333	69	51	162	11	38	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	a0002	248	61	0	23	34	0	4	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	a0003	248	29	26	2	0	0	1	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	a0004	248	5	0	2	0	1	2	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	a0005	209	2	1	1	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	a0006	248	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	a0007	248	1	0	1	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	a0008	248	1	0	0	0	0	1	copy fasta	MBL2	chr10	52760380	52777784
MBLAC1_chr7_100121967_100133495	1/1	a0001	266	356	76	65	160	13	40	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	a0002	266	18	2	4	8	1	3	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	a0003	266	11	10	1	0	0	0	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	a0004	266	5	4	0	0	0	1	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC2_chr5_90453209_90479771	0/1	a0001	279	368	92	63	156	12	44	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	1/0	a0002	279	8	0	0	7	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	a0003	25	1	0	0	1	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	a0004	279	1	0	1	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBNL1_chr3_152263929_152470780	1/1	a0001	382	337	86	60	137	16	36	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	a0002	382	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL2_chr13_97217333_97399120	1/1	a0001	391	252	87	54	69	12	28	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	a0002	391	1	0	0	1	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	a0003	391	1	1	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL3_chrX_132364320_132494038	1/1	a0001	354	191	56	30	76	9	18	copy fasta	MBNL3	chrX	132364320	132494038
MBOAT1_chr6_20094684_20217469	1/1	a0001	495	286	53	49	127	12	43	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	a0002	495	23	17	5	0	0	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	a0003	495	18	15	3	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	a0004	495	5	4	1	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	a0005	495	2	0	0	0	0	2	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	a0006	495	1	1	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	a0007	495	1	0	0	1	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT2_chr2_8847690_9008684	1/1	a0001	520	151	73	25	27	4	20	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	a0002	520	7	4	2	1	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	a0003	520	3	0	1	0	0	2	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	a0004	520	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT4_chr8_30126671_30149665	0/1	a0001	435	261	50	43	122	14	31	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	1/0	a0002	435	85	20	5	52	2	5	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	a0003	435	23	21	2	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	a0004	435	4	4	0	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	a0005	435	1	0	1	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	a0006	435	1	0	1	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	a0007	435	1	1	0	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	a0008	435	1	0	0	0	0	1	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	a0009	435	1	1	0	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	a0010	435	1	0	0	0	0	1	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	a0011	435	1	1	0	0	0	0	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT7_chr19_54168415_54194580	0/1	a0001	472	340	85	74	124	18	38	copy fasta	MBOAT7	chr19	54168415	54194580