JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MDFIC2_chr3_70189479_70317638	0/0	a0003	189	1	0	1	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	a0004	189	1	0	0	1	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	a0005	189	1	0	0	0	0	1	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC_chr7_114917094_115024917	1/1	a0001	246	332	77	68	136	13	36	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	a0002	246	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	a0003	246	1	0	0	0	1	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFI_chr6_41633468_41659244	1/1	a0001	246	454	91	84	211	18	48	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	a0002	246	3	3	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	a0003	246	2	2	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	a0004	246	1	1	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	a0005	246	1	0	0	1	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	a0006	246	1	1	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDGA1_chr6_37625679_37702883	1/1	a0001	955	369	91	64	159	12	41	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0002	955	20	0	8	1	5	6	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0003	955	3	3	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0004	955	3	0	0	3	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0005	955	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0006	955	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0007	955	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0008	955	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0009	955	1	0	0	0	1	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0010	955	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	a0011	955	1	0	0	0	0	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA2_chr14_46835092_47680605	0/0	a0001	1025	94	33	31	6	5	19	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	a0002	1025	18	15	2	0	0	1	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	a0003	1025	3	3	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	a0004	1025	3	0	0	2	1	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	a0005	1025	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	a0006	1025	1	0	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDH1B_chr2_206732763_206770328	1/1	a0001	518	224	51	47	85	10	29	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	a0002	518	98	29	11	52	1	5	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	a0003	518	23	1	2	18	0	2	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	a0004	518	17	9	1	1	1	5	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	a0005	518	3	2	1	0	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	a0006	518	2	0	0	2	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	a0007	518	1	1	0	0	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	a0008	518	1	0	0	0	0	1	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	a0009	518	1	1	0	0	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1_chr2_63583963_63612197	1/1	a0001	334	354	96	64	130	16	46	copy fasta	MDH1	chr2	63583963	63612197
MDH2_chr7_76043106_76072508	0/0	a0001	338	235	61	28	115	6	25	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	1/1	a0002	338	151	23	35	61	10	20	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	a0003	338	9	1	7	0	1	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	a0004	338	1	0	0	0	1	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	a0005	338	1	0	0	0	0	1	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	a0006	338	1	1	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDK_chr11_46376669_46388801	1/1	a0001	143	309	98	56	109	8	36	copy fasta	MDK	chr11	46376669	46388801
MDK_chr11_46376669_46388801	0/0	a0002	143	1	0	0	1	0	0	copy fasta	MDK	chr11	46376669	46388801
MDM1_chr12_68289566_68337362	1/1	a0001	724	128	18	18	72	5	13	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0002	724	120	54	19	39	2	6	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0003	724	79	4	14	44	4	13	copy fasta	MDM1	chr12	68289566	68337362