JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MDM1_chr12_68289566_68337362	0/0	a0004	724	54	1	22	24	3	4	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0005	724	6	4	1	0	0	1	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0006	724	6	6	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0007	724	4	4	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0008	724	1	0	0	0	0	1	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0009	724	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0010	724	1	0	0	1	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0011	724	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	a0012	724	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM2_chr12_68803177_68850544	1/1	a0001	497	386	87	75	172	16	34	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	a0002	497	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	a0003	497	1	0	1	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM4_chr1_204511406_204563120	1/1	a0001	490	356	73	47	176	14	44	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	a0002	490	8	0	8	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	a0003	490	2	2	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	a0004	490	2	2	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	a0005	490	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	a0006	490	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	a0007	490	1	0	1	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	a0008	490	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDN1_chr6_89637498_89824794	0/0	a0001	5596	66	7	19	39	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0002	5596	48	5	9	26	3	5	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0003	5596	27	5	3	10	1	8	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	1/0	a0004	5596	23	12	5	0	3	2	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/1	a0005	5596	22	6	5	3	2	5	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0006	5596	21	0	8	6	2	5	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0007	5596	14	1	4	5	2	2	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0008	5596	9	0	2	4	0	3	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0009	5596	5	5	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0010	5596	3	3	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0011	5596	3	3	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0012	5596	3	0	0	3	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0013	5596	3	3	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0014	5596	2	0	1	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0015	5596	2	2	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0016	5596	2	2	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0017	5596	2	0	0	2	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0018	5596	2	2	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0019	5596	2	0	0	0	0	2	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0020	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0021	5596	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0022	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0023	5596	1	0	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0024	5596	1	0	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0025	5596	1	0	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0026	5596	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0027	5596	1	0	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0028	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0029	5596	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0030	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794