JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MED12_chrX_71113596_71147450	0/0	a0003	2177	2	0	2	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0004	467	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0005	2177	1	0	0	0	0	1	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0006	1544	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0007	2049	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0008	1748	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0009	2177	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0010	897	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0011	580	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0012	338	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0013	83	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED13L_chr12_115953576_116282693	1/1	a0001	2210	246	51	39	114	15	25	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	a0002	2210	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	a0003	2210	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	a0004	2210	1	0	0	0	0	1	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	a0005	2210	1	0	1	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	a0006	2210	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	a0007	2210	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	a0008	2210	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	a0009	2210	1	0	0	0	1	0	copy fasta	MED13L	chr12	115953576	116282693
MED13_chr17_61937605_62070278	1/1	a0001	2174	310	71	43	152	6	36	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0002	2174	7	7	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0003	2174	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0004	2174	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0005	2174	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0006	2174	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0007	2174	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0008	2174	1	0	1	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0009	2174	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0010	2174	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	a0011	2174	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED14_chrX_40643305_40740542	1/1	a0001	1454	244	62	40	114	7	19	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	a0002	45	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	a0003	1454	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	a0004	1454	1	0	0	0	0	1	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	a0005	1454	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	a0006	1454	1	1	0	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	a0007	1454	1	1	0	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	a0008	470	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED15_chr22_20502610_20592619	1/0	a0001	788	264	65	51	111	11	25	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0002	789	51	9	8	21	4	9	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0003	787	8	4	1	1	0	2	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0004	785	3	2	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0005	787	2	2	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0006	784	2	2	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0007	788	2	0	0	2	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0008	788	2	0	2	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0009	786	1	1	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0010	788	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0011	788	1	0	0	0	1	0	copy fasta	MED15	chr22	20502610	20592619