Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANO10_chr3_43360848_43627011	0/0	a0012	660	1	1	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO1_chr11_70073317_70194530	1/1	a0001	986	255	73	56	81	14	29	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0002	986	18	2	6	5	2	3	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0003	986	12	7	3	1	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0004	986	4	0	4	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0005	986	2	0	2	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0006	986	2	0	2	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0007	986	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0008	986	1	0	0	1	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0009	986	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0010	986	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0011	986	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0012	986	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0013	986	1	0	1	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0014	986	1	0	0	0	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	a0015	986	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO2_chr12_5557655_5950259	1/1	a0001	998	101	42	33	17	2	5	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0002	998	22	16	0	2	1	3	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0003	998	17	1	6	8	1	1	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0004	998	7	0	3	1	0	3	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0005	998	3	3	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0006	998	2	2	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0007	998	2	0	2	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0008	998	2	2	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0009	998	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0010	998	1	0	0	0	0	1	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0011	998	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0012	998	1	0	0	1	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0013	998	1	0	0	1	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	a0014	998	1	0	0	0	0	1	copy fasta	ANO2	chr12	5557655	5950259
ANO3_chr11_26327130_26668289	1/1	a0001	981	189	68	42	53	2	22	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	a0002	981	1	0	0	1	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO4_chr12_100789776_101133629	1/1	a0001	955	223	76	44	73	12	16	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	a0002	955	11	2	2	6	0	1	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	a0003	955	1	0	0	1	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	a0004	955	1	0	0	0	0	1	copy fasta	ANO4	chr12	100789776	101133629
ANO5_chr11_22188085_22288357	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	1/1	a0001	913	261	72	33	134	4	16	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0002	913	76	5	19	36	2	14	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0003	913	6	6	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0004	913	4	4	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0005	913	4	0	4	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0006	913	4	4	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0007	913	2	2	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0008	913	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0009	913	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0010	913	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0011	913	1	0	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0012	913	1	0	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	a0013	913	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357