JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MPP4_chr2_201639874_201703644	0/0	a0013	637	1	1	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0014	637	1	0	0	0	0	1	copy fasta	MPP4	chr2	201639874	201703644
MPP7_chr10_28045993_28308064	0/1	a0001	576	263	77	44	107	3	31	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	1/0	a0002	576	24	5	5	7	1	5	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	a0003	576	10	0	10	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	a0004	576	1	0	0	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	a0005	576	1	0	1	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	a0006	576	1	0	0	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPPE1_chr18_11877622_11913317	0/0	a0001	396	239	70	27	122	2	18	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	1/1	a0002	396	184	23	41	72	15	31	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0003	396	16	0	7	9	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0004	396	7	5	0	2	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0005	396	2	0	2	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0006	396	2	0	2	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0007	396	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0008	224	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0009	396	1	0	0	0	1	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0010	396	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0011	396	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	a0012	396	1	0	1	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPED1_chr22_43407014_43512848	1/1	a0001	326	249	80	52	69	12	34	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	a0002	326	1	0	0	1	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED2_chr11_30405224_30591353	1/1	a0001	294	262	74	48	100	8	30	copy fasta	MPPED2	chr11	30405224	30591353
MPRIP_chr17_17037457_17197643	0/1	a0001	2424	83	4	17	44	4	13	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0002	2424	72	20	5	35	1	11	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	1/0	a0003	2425	52	23	18	3	3	4	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0004	2424	38	24	11	0	2	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0005	2423	28	1	0	23	0	4	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0006	2424	8	5	3	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0007	2424	6	0	6	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0008	2424	4	0	2	2	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0009	2424	3	0	0	3	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0010	2420	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0011	2421	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0012	2423	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0013	2424	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0014	2424	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0015	2424	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0016	2424	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0017	2424	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0018	2424	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0019	2424	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0020	2424	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0021	2424	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0022	2424	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0023	2424	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0024	2424	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0025	2424	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0026	2424	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0027	2425	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643