JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MSANTD3_chr9_100422143_100456734	0/0	a0003	275	1	0	0	1	0	0	copy fasta	MSANTD3	chr9	100422143	100456734
MSANTD4_chr11_106002899_106027240	1/1	a0001	345	384	90	66	174	16	36	copy fasta	MSANTD4	chr11	106002899	106027240
MSANTD5_chr5_178689572_178702761	0/0	a0001	213	173	23	41	80	7	22	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	a0002	213	127	24	16	66	4	17	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	a0003	213	60	38	18	0	3	1	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	1/1	a0004	213	54	4	3	37	2	6	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	a0005	213	9	0	0	8	0	1	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	a0006	213	4	4	0	0	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	a0007	213	1	0	0	1	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	a0008	213	1	0	0	0	0	1	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	a0009	213	1	1	0	0	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD7_chr10_14833306_14851999	1/1	a0001	361	381	93	52	183	14	37	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	a0002	361	16	1	9	0	1	5	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	a0003	361	4	0	2	1	1	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	a0004	361	1	0	1	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	a0005	361	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	a0006	361	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSC_chr8_71836560_71849412	1/1	a0001	206	469	96	74	232	18	47	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	a0002	206	2	2	0	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	a0003	206	1	0	0	0	0	1	copy fasta	MSC	chr8	71836560	71849412
MSGN1_chr2_17811460_17822798	1/0	a0001	193	257	70	46	111	9	20	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/1	a0002	193	79	18	22	5	9	24	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	a0003	193	10	8	2	0	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	a0004	193	1	0	0	1	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	a0005	193	1	0	0	1	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSH2_chr2_47398156_47488223	1/1	a0001	934	344	73	64	157	12	36	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0002	934	13	13	0	0	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0003	934	3	0	0	3	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0004	934	2	0	0	2	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0005	934	2	0	0	0	0	2	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0006	934	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0007	934	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0008	934	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0009	934	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0010	934	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	a0011	934	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH3_chr5_80649652_80881815	0/0	a0001	1137	175	27	36	92	4	16	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0002	1128	39	17	5	6	4	7	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/1	a0003	1140	38	4	10	18	1	4	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0004	1137	22	2	2	7	2	9	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0005	1128	13	3	7	0	1	2	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0006	1140	10	0	0	9	0	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0007	1137	8	5	0	3	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0008	1128	6	3	1	1	1	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0009	1131	5	0	0	5	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0010	1134	3	3	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	1/0	a0011	1137	3	0	2	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0012	1137	3	3	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0013	1143	3	3	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	a0014	1143	2	0	1	0	0	1	copy fasta	MSH3	chr5	80649652	80881815