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geneid	343930
ensemblid	ENSG00000151379.4
hgncid	14907
symbol	MSGN1
name	mesogenin 1
refseq_nuc	NM_001105569.3
refseq_prot	NP_001099039.1
ensembl_nuc	ENST00000281047.4
ensembl_prot	ENSP00000281047.3
mane_status	MANE Select
chr	chr2
start	17816460
end	17817798
strand	+
ver	v1.2
region	chr2:17816460-17817798
region5000	chr2:17811460-17822798
regionname0	MSGN1_chr2_17816460_17817798
regionname5000	MSGN1_chr2_17811460_17822798

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/0	193	257	70	46	111	9	20	88	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0002	0/1	193	79	18	22	5	9	24	4	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0003	0/0	193	10	8	2	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0004	0/0	193	1	0	0	1	0	0	1	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0005	0/0	193	1	0	0	1	0	0	1	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/0	582	253	67	45	111	9	20	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
c0002	0/1	582	76	17	22	5	9	22	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
c0003	0/0	582	8	8	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
c0004	0/0	582	3	3	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
c0005	0/0	582	3	1	0	0	0	2	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
c0006	0/0	582	2	0	2	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
c0007	0/0	582	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
c0008	0/0	582	1	0	1	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
c0009	0/0	582	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	758	325	92	60	114	15	42	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
t0002	0/0	758	17	2	9	3	2	1	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
t0003	0/0	758	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
t0004	0/0	758	1	1	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
t0005	0/0	758	1	0	1	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
t0006	0/0	758	1	1	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
t0007	0/0	758	1	0	0	0	0	1	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
t0008	0/0	758	1	0	0	0	1	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	1/1	348	96	70	118	18	44	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/0	582	253	67	45	111	9	20	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0001c0004	0/0	582	3	3	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0001c0008	0/0	582	1	0	1	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0002c0002	0/1	582	76	17	22	5	9	22	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0002c0005	0/0	582	3	1	0	0	0	2	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0003c0003	0/0	582	8	8	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0003c0006	0/0	582	2	0	2	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0004c0007	0/0	582	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0005c0009	0/0	582	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/0	1339	250	66	45	111	8	19	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0001c0001t0006	0/0	1339	1	1	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0001c0001t0007	0/0	1339	1	0	0	0	0	1	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0001c0001t0008	0/0	1339	1	0	0	0	1	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0001c0004t0001	0/0	1339	3	3	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0001c0008t0001	0/0	1339	1	0	1	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0002c0002t0001	0/1	1339	57	14	12	2	7	21	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0002c0002t0002	0/0	1339	16	2	9	2	2	1	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0002c0002t0003	0/0	1339	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0002c0002t0004	0/0	1339	1	1	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0002c0002t0005	0/0	1339	1	0	1	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0002c0005t0001	0/0	1339	3	1	0	0	0	2	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0003c0003t0001	0/0	1339	8	8	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0003c0006t0001	0/0	1339	2	0	2	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0004c0007t0001	0/0	1339	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798
a0005c0009t0002	0/0	1339	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	copy fasta	chr2	17811460	17822798

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0000	1/0	250	66	45	111	8	19	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0001c0001t0006g0000	0/0	1	1	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0001c0001t0007g0000	0/0	1	0	0	0	0	1	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0001c0001t0008g0000	0/0	1	0	0	0	1	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0001c0004t0001g0000	0/0	3	3	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0001c0008t0001g0000	0/0	1	0	1	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0002c0002t0001g0000	0/1	57	14	12	2	7	21	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0002c0002t0002g0000	0/0	16	2	9	2	2	1	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0002c0002t0003g0000	0/0	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0002c0002t0004g0000	0/0	1	1	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0002c0002t0005g0000	0/0	1	0	1	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0002c0005t0001g0000	0/0	3	1	0	0	0	2	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0003c0003t0001g0000	0/0	8	8	0	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0003c0006t0001g0000	0/0	2	0	2	0	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0004c0007t0001g0000	0/0	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
a0005c0009t0002g0000	0/0	1	0	0	1	0	0	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0002	c0002	t0001	g0000	EUR	GBR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00099	hp2	a0001	c0001	t0001	g0000	EUR	GBR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00140	hp1	a0001	c0001	t0008	g0000	EUR	GBR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00140	hp2	a0002	c0002	t0002	g0000	EUR	GBR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00280	hp1	a0002	c0002	t0001	g0000	EUR	FIN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00280	hp2	a0001	c0001	t0001	g0000	EUR	FIN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00323	hp1	a0001	c0001	t0001	g0000	EUR	FIN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00323	hp2	a0002	c0002	t0001	g0000	EUR	FIN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00408	hp1	a0001	c0001	t0001	g0000	EAS	CHS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00408	hp2	a0001	c0001	t0001	g0000	EAS	CHS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00438	hp1	a0001	c0001	t0001	g0000	EAS	CHS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00438	hp2	a0001	c0001	t0001	g0000	EAS	CHS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00544	hp1	a0001	c0001	t0001	g0000	EAS	CHS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00544	hp2	a0001	c0001	t0001	g0000	EAS	CHS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00639	hp1	a0003	c0006	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00639	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00642	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00642	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00733	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00733	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00735	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00735	hp2	a0002	c0002	t0002	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00738	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00738	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00741	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG00741	hp2	a0002	c0002	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01069	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01069	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01070	hp1	a0002	c0002	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01070	hp2	a0002	c0002	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01071	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01071	hp2	a0002	c0002	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01074	hp1	a0003	c0006	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01074	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01081	hp1	a0002	c0002	t0005	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01081	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01099	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01099	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01106	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01106	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01109	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01109	hp2	a0002	c0002	t0002	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01167	hp1	a0002	c0002	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01167	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01168	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01168	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01175	hp1	a0002	c0002	t0002	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01175	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01192	hp1	a0002	c0002	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01192	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01243	hp1	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01243	hp2	a0001	c0001	t0001	g0000	AMR	PUR	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01255	hp1	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01255	hp2	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01256	hp1	a0002	c0002	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01256	hp2	a0002	c0002	t0002	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01257	hp1	a0002	c0002	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01257	hp2	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01258	hp1	a0002	c0002	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01258	hp2	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01261	hp1	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01261	hp2	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01346	hp1	a0001	c0008	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01346	hp2	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01358	hp1	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01358	hp2	a0002	c0002	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01361	hp1	a0002	c0002	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01361	hp2	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01433	hp1	a0002	c0002	t0002	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01433	hp2	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01515	hp1	a0001	c0001	t0001	g0000	EUR	IBS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01515	hp2	a0001	c0001	t0001	g0000	EUR	IBS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01516	hp1	a0002	c0002	t0002	g0000	EUR	IBS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01516	hp2	a0002	c0002	t0001	g0000	EUR	IBS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01517	hp1	a0002	c0002	t0001	g0000	EUR	IBS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01517	hp2	a0001	c0001	t0001	g0000	EUR	IBS	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01884	hp1	a0002	c0002	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01884	hp2	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01891	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01891	hp2	a0003	c0003	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01928	hp1	a0001	c0001	t0001	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01928	hp2	a0001	c0001	t0001	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01934	hp1	a0001	c0001	t0001	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01934	hp2	a0002	c0002	t0001	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01952	hp1	a0001	c0001	t0001	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01952	hp2	a0001	c0001	t0001	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01981	hp1	a0002	c0002	t0002	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01981	hp2	a0001	c0001	t0001	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02004	hp1	a0002	c0002	t0002	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02004	hp2	a0001	c0001	t0001	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02055	hp1	a0003	c0003	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02055	hp2	a0002	c0002	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02056	hp1	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02056	hp2	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02071	hp1	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02071	hp2	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02080	hp1	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02080	hp2	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02083	hp1	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02083	hp2	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02129	hp1	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02129	hp2	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02132	hp1	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02132	hp2	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02135	hp1	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02135	hp2	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02145	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02145	hp2	a0002	c0002	t0002	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02257	hp1	a0003	c0003	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02257	hp2	a0002	c0002	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02258	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02258	hp2	a0002	c0002	t0002	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02300	hp1	a0002	c0002	t0002	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02300	hp2	a0001	c0001	t0001	g0000	AMR	PEL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02451	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02451	hp2	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02523	hp1	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02523	hp2	a0001	c0001	t0001	g0000	EAS	KHV	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02572	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02572	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02602	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02602	hp2	a0001	c0001	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02615	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02615	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02622	hp1	a0003	c0003	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02622	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02630	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02630	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02698	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02698	hp2	a0001	c0001	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02717	hp1	a0002	c0002	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02717	hp2	a0001	c0004	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02723	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02723	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02735	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02735	hp2	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02738	hp1	a0002	c0005	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02738	hp2	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02809	hp1	a0002	c0002	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02809	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02818	hp1	a0002	c0002	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02818	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02886	hp1	a0002	c0002	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02886	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02895	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02895	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02896	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02896	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02897	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02897	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02922	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02922	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02965	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02965	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02970	hp1	a0003	c0003	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02970	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02976	hp1	a0002	c0002	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02976	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03017	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03017	hp2	a0001	c0001	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03041	hp1	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03041	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03098	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03098	hp2	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03130	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03130	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03139	hp1	a0003	c0003	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03139	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03195	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03195	hp2	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03209	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03209	hp2	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03225	hp1	a0001	c0004	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03225	hp2	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03239	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03239	hp2	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03453	hp1	a0001	c0004	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03453	hp2	a0002	c0002	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03486	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03486	hp2	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03490	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03490	hp2	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03491	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03491	hp2	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03492	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03492	hp2	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03516	hp1	a0001	c0001	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03516	hp2	a0003	c0003	t0001	g0000	AFR	ESN	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03540	hp1	a0003	c0003	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03540	hp2	a0001	c0001	t0001	g0000	AFR	GWD	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03579	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03579	hp2	a0002	c0002	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03654	hp1	a0002	c0002	t0002	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03654	hp2	a0001	c0001	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03669	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03669	hp2	a0001	c0001	t0007	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03688	hp1	a0002	c0002	t0001	g0000	SAS	STU	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03688	hp2	a0001	c0001	t0001	g0000	SAS	STU	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03704	hp1	a0001	c0001	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03704	hp2	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03710	hp1	a0002	c0002	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03710	hp2	a0002	c0005	t0001	g0000	SAS	PJL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03831	hp1	a0001	c0001	t0001	g0000	SAS	BEB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03831	hp2	a0002	c0002	t0001	g0000	SAS	BEB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03834	hp1	a0001	c0001	t0001	g0000	SAS	BEB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03834	hp2	a0001	c0001	t0001	g0000	SAS	BEB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03942	hp1	a0001	c0001	t0001	g0000	SAS	BEB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03942	hp2	a0001	c0001	t0001	g0000	SAS	BEB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG04115	hp1	a0001	c0001	t0001	g0000	SAS	STU	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG04115	hp2	a0001	c0001	t0001	g0000	SAS	STU	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG04184	hp1	a0002	c0002	t0001	g0000	SAS	BEB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG04184	hp2	a0001	c0001	t0001	g0000	SAS	BEB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG04199	hp1	a0002	c0002	t0001	g0000	SAS	STU	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG04199	hp2	a0001	c0001	t0001	g0000	SAS	STU	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG04228	hp1	a0002	c0002	t0001	g0000	SAS	STU	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG04228	hp2	a0002	c0002	t0001	g0000	SAS	STU	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18522	hp1	a0001	c0001	t0001	g0000	AFR	YRI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18522	hp2	a0002	c0002	t0004	g0000	AFR	YRI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18747	hp1	a0001	c0001	t0001	g0000	EAS	CHB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18747	hp2	a0002	c0002	t0002	g0000	EAS	CHB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18906	hp1	a0001	c0001	t0001	g0000	AFR	YRI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18906	hp2	a0001	c0001	t0001	g0000	AFR	YRI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18941	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18941	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18943	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18943	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18945	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18945	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18946	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18946	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18950	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18950	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18952	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18952	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18956	hp1	a0002	c0002	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18956	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18957	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18957	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18959	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18959	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18964	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18964	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18967	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18967	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18968	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18968	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18969	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18969	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18970	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18970	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18971	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18971	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18974	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18974	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18975	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18975	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18978	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18978	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18979	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18979	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18980	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18980	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18983	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18983	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18984	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18984	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18986	hp1	a0004	c0007	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18986	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18987	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18987	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18989	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18989	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18992	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18992	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18999	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18999	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19000	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19000	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19001	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19001	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19003	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19003	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19006	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19006	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19007	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19007	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19012	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19012	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19030	hp1	a0001	c0001	t0001	g0000	AFR	LWK	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19030	hp2	a0001	c0001	t0001	g0000	AFR	LWK	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19043	hp1	a0001	c0001	t0001	g0000	AFR	LWK	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19043	hp2	a0001	c0001	t0001	g0000	AFR	LWK	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19056	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19056	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19057	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19057	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19060	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19060	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19064	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19064	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19065	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19065	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19066	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19066	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19067	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19067	hp2	a0002	c0002	t0003	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19070	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19070	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19074	hp1	a0005	c0009	t0002	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19074	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19077	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19077	hp2	a0002	c0002	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19078	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19078	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19079	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19079	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19080	hp1	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19080	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19240	hp1	a0002	c0002	t0001	g0000	AFR	YRI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA19240	hp2	a0001	c0001	t0001	g0000	AFR	YRI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20129	hp1	a0001	c0001	t0001	g0000	AFR	ASW	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20129	hp2	a0001	c0001	t0001	g0000	AFR	ASW	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20752	hp1	a0002	c0002	t0001	g0000	EUR	TSI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20752	hp2	a0001	c0001	t0001	g0000	EUR	TSI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20805	hp1	a0002	c0002	t0001	g0000	EUR	TSI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20805	hp2	a0001	c0001	t0001	g0000	EUR	TSI	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20905	hp1	a0002	c0002	t0001	g0000	SAS	GIH	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20905	hp2	a0001	c0001	t0001	g0000	SAS	GIH	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01123	hp1	a0002	c0002	t0002	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG01123	hp2	a0001	c0001	t0001	g0000	AMR	CLM	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02109	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02109	hp2	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02486	hp1	a0002	c0002	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02486	hp2	a0001	c0001	t0006	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02559	hp1	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG02559	hp2	a0001	c0001	t0001	g0000	AFR	ACB	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03471	hp1	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG03471	hp2	a0001	c0001	t0001	g0000	AFR	MSL	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG06807	hp1	a0002	c0005	t0001	g0000	AFR	USA	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
HG06807	hp2	a0001	c0001	t0001	g0000	AFR	USA	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18955	hp1	a0002	c0002	t0002	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA18955	hp2	a0001	c0001	t0001	g0000	EAS	JPT	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20300	hp1	a0001	c0001	t0001	g0000	AFR	USA	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA20300	hp2	a0001	c0001	t0001	g0000	AFR	USA	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA21309	hp1	a0002	c0002	t0001	g0000	AFR	LWK	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
NA21309	hp2	a0002	c0002	t0001	g0000	AFR	LWK	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
homoSapiens_chm13v2	hp1	a0002	c0002	t0001	g0000	REF	REF	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0000	REF	REF	MSGN1_chr2_17811460_17822798	MSGN1	chr2	17811460	17822798

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr2:17816599	G G	C C	1	a0004 a0004	1	NA18986.hp1 NA18986.hp1	missense_variant	MODERATE	c.81G>C c.81G>C	p.Trp27Cys p.Trp27Cys	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	140/1339	81/582	27/193	chr2	17816599
chr2:17816758	A A	T T	2	a0002 a0003 a0002 a0003	89	HG00099.hp1 HG00140.hp2 HG00280.hp1 others(86): Show HG00099.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp2 HG00639.hp1 HG00735.hp2 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01109.hp2 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01358.hp2 HG01361.hp1 HG01433.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG01934.hp2 HG01981.hp1 HG02004.hp1 HG02055.hp1 HG02055.hp2 HG02145.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02300.hp1 HG02486.hp1 HG02622.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02818.hp1 HG02886.hp1 HG02970.hp1 HG02976.hp1 HG03017.hp1 HG03139.hp1 HG03239.hp2 HG03453.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03540.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp2 HG04184.hp1 HG04199.hp1 HG04228.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp2 NA18747.hp2 NA18955.hp1 NA18956.hp1 NA19067.hp2 NA19077.hp2 NA19240.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.240A>T c.240A>T	p.Glu80Asp p.Glu80Asp	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	299/1339	240/582	80/193	chr2	17816758
chr2:17816828	C C	T T	2	a0002 a0005 a0002 a0005	80	HG00099.hp1 HG00140.hp2 HG00280.hp1 others(77): Show HG00099.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp2 HG00735.hp2 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01081.hp1 HG01109.hp2 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01358.hp2 HG01361.hp1 HG01433.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01934.hp2 HG01981.hp1 HG02004.hp1 HG02055.hp2 HG02145.hp2 HG02257.hp2 HG02258.hp2 HG02300.hp1 HG02486.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02818.hp1 HG02886.hp1 HG02976.hp1 HG03017.hp1 HG03239.hp2 HG03453.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03579.hp2 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp2 HG04184.hp1 HG04199.hp1 HG04228.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp2 NA18747.hp2 NA18955.hp1 NA18956.hp1 NA19067.hp2 NA19074.hp1 NA19077.hp2 NA19240.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.310C>T c.310C>T	p.His104Tyr p.His104Tyr	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	369/1339	310/582	104/193	chr2	17816828

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr2:17816863	G G	A A	1	a0001c0004 a0001c0004	3	HG02717.hp2 HG03225.hp1 HG03453.hp1 HG02717.hp2 HG03225.hp1 HG03453.hp1	synonymous_variant	LOW	c.345G>A c.345G>A	p.Lys115Lys p.Lys115Lys	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	404/1339	345/582	115/193			chr2	17816863
chr2:17817064	T T	C C	4	a0001c0008 a0002c0002 a0003c0006 others(1): Show a0001c0008 a0002c0002 a0003c0006 a0005c0009	80	HG00099.hp1 HG00140.hp2 HG00280.hp1 others(77): Show HG00099.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp2 HG00639.hp1 HG00735.hp2 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01109.hp2 HG01123.hp1 HG01167.hp1 HG01175.hp1 HG01192.hp1 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01346.hp1 HG01358.hp2 HG01361.hp1 HG01433.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01934.hp2 HG01981.hp1 HG02004.hp1 HG02055.hp2 HG02145.hp2 HG02257.hp2 HG02258.hp2 HG02300.hp1 HG02486.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp2 HG02738.hp2 HG02809.hp1 HG02818.hp1 HG02886.hp1 HG02976.hp1 HG03017.hp1 HG03239.hp2 HG03453.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03579.hp2 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG04184.hp1 HG04199.hp1 HG04228.hp1 HG04228.hp2 NA18522.hp2 NA18747.hp2 NA18955.hp1 NA18956.hp1 NA19067.hp2 NA19074.hp1 NA19077.hp2 NA19240.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.546T>C c.546T>C	p.Leu182Leu p.Leu182Leu	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	605/1339	546/582	182/193			chr2	17817064

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr2:17816485	A A	G G	1	a0001c0001t0008 a0001c0001t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-34A>G c.-34A>G	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	34	chr2	17816485
chr2:17817141	A A	T T	1	a0001c0001t0007 a0001c0001t0007	1	HG03669.hp2 HG03669.hp2	3_prime_UTR_variant	MODIFIER	c.41A>T c.41A>T	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	41	chr2	17817141
chr2:17817191	C C	T T	1	a0001c0001t0006 a0001c0001t0006	1	HG02486.hp2 HG02486.hp2	3_prime_UTR_variant	MODIFIER	c.91C>T c.91C>T	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	91	chr2	17817191
chr2:17817420	T T	A A	1	a0002c0002t0003 a0002c0002t0003	1	NA19067.hp2 NA19067.hp2	3_prime_UTR_variant	MODIFIER	c.320T>A c.320T>A	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	320	chr2	17817420
chr2:17817569	C C	T T	1	a0002c0002t0005 a0002c0002t0005	1	HG01081.hp1 HG01081.hp1	3_prime_UTR_variant	MODIFIER	c.469C>T c.469C>T	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	469	chr2	17817569
chr2:17817663	C C	T T	1	a0002c0002t0004 a0002c0002t0004	1	NA18522.hp2 NA18522.hp2	3_prime_UTR_variant	MODIFIER	c.563C>T c.563C>T	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	563	chr2	17817663
chr2:17817780	G G	A A	3	a0002c0002t0002 a0002c0002t0003 a0005c0009t0002 a0002c0002t0002 a0002c0002t0003 a0005c0009t0002	18	HG00140.hp2 HG00735.hp2 HG01109.hp2 others(15): Show HG00140.hp2 HG00735.hp2 HG01109.hp2 HG01123.hp1 HG01175.hp1 HG01256.hp2 HG01433.hp1 HG01516.hp1 HG01981.hp1 HG02004.hp1 HG02145.hp2 HG02258.hp2 HG02300.hp1 HG03654.hp1 NA18747.hp2 NA18955.hp1 NA19067.hp2 NA19074.hp1	3_prime_UTR_variant	MODIFIER	c.680G>A c.680G>A	MSGN1	ENSG00000151379.4	transcript	ENST00000281047.4	protein_coding	1/1	680	chr2	17817780

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 5)

CCoding Level Haplotype Info (Total: 9)

TTranscript Level Haplotype Info (Total: 8)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 9)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 16)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 16)

Haplotype Details by Sample (Haploid Level) (Total: 348)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

CCoding Level Variants (Synonymous Mutations) (Total: 2)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 7)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

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Annotation (Repeats)

Annotation (SNP Array)