JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MT4_chr16_56560073_56573957	0/0	a0004	62	1	1	0	0	0	0	copy fasta	MT4	chr16	56560073	56573957
MTA1_chr14_105414827_105475729	0/1	a0001	715	156	41	42	44	10	18	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	a0002	715	78	1	14	50	2	11	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	1/0	a0003	715	39	34	4	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	a0004	550	14	3	4	3	0	4	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	a0005	550	10	0	3	4	0	3	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	a0006	715	3	3	0	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	a0007	715	2	1	1	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	a0008	715	1	0	0	1	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	a0009	715	1	1	0	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA2_chr11_62588214_62606865	1/1	a0001	668	361	85	74	154	10	36	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	a0002	668	1	1	0	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA3_chr2_42563632_42761946	1/1	a0001	594	304	67	73	106	16	40	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	a0002	594	5	5	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	a0003	594	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	a0004	594	1	0	1	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	a0005	594	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTAP_chr9_21797636_21872081	1/0	a0001	283	243	47	37	123	10	25	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/1	a0002	283	135	44	25	46	6	13	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	a0003	283	2	0	0	0	0	2	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	a0004	283	1	0	0	1	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	a0005	283	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTARC1_chr1_220781913_220824659	0/1	a0001	337	309	88	54	115	14	37	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	1/0	a0002	337	65	5	16	38	1	4	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	a0003	337	18	2	5	10	1	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	a0004	337	14	0	0	14	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	a0005	337	10	0	1	9	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	a0006	337	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	a0007	337	1	0	0	0	0	1	copy fasta	MTARC1	chr1	220781913	220824659
MTARC2_chr1_220743322_220789815	1/1	a0001	335	372	89	60	171	11	39	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	a0002	335	22	2	0	17	1	2	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	a0003	335	1	0	0	1	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	a0004	335	1	0	0	0	0	1	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	a0005	335	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	a0006	335	1	0	0	1	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTBP_chr8_120440419_120528636	1/1	a0001	904	322	67	60	147	10	36	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0002	904	9	7	2	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0003	904	4	4	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0004	904	4	4	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0005	904	3	3	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0006	904	2	0	0	2	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0007	904	1	0	0	0	0	1	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0008	904	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0009	904	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0010	904	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0011	904	1	0	0	1	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0012	904	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0013	904	1	0	0	0	0	1	copy fasta	MTBP	chr8	120440419	120528636
MTBP_chr8_120440419_120528636	0/0	a0014	904	1	1	0	0	0	0	copy fasta	MTBP	chr8	120440419	120528636
MTCH1_chr6_36963141_36991196	1/1	a0001	389	394	94	71	175	13	39	copy fasta	MTCH1	chr6	36963141	36991196