Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
APCDD1_chr18_10449635_10494949	0/0	a0003	514	4	3	1	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	a0004	514	1	0	0	1	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	a0005	514	1	0	1	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	a0006	514	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCS_chr1_159582826_159593865	1/1	a0001	223	421	90	78	196	12	43	copy fasta	APCS	chr1	159582826	159593865
APCS_chr1_159582826_159593865	0/0	a0002	223	1	0	0	0	0	1	copy fasta	APCS	chr1	159582826	159593865
APC_chr5_112732885_112851239	0/1	a0001	2843	234	75	43	88	4	23	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	1/0	a0002	2843	42	3	11	18	2	7	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0003	2843	3	1	1	0	0	1	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0004	2842	3	2	1	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0005	2843	2	2	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0006	2843	2	2	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0007	2843	1	0	0	0	0	1	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0008	2843	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0009	2843	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0010	2843	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0011	2843	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0012	2843	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0013	2843	1	1	0	0	0	0	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	0/0	a0014	2843	1	0	0	1	0	0	copy fasta	APC	chr5	112732885	112851239
APEH_chr3_49669351_49688971	1/1	a0001	732	307	89	63	102	18	33	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	a0002	732	4	0	0	4	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	a0003	732	2	2	0	0	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	a0004	732	2	0	0	2	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	a0005	732	1	0	1	0	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	a0006	732	1	1	0	0	0	0	copy fasta	APEH	chr3	49669351	49688971
APEH_chr3_49669351_49688971	0/0	a0007	732	1	0	0	0	0	1	copy fasta	APEH	chr3	49669351	49688971
APELA_chr4_164872178_164902527	1/1	a0001	54	434	98	74	194	18	48	copy fasta	APELA	chr4	164872178	164902527
APEX1_chr14_20450226_20462767	1/1	a0001	318	298	64	44	145	9	34	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	a0002	318	152	26	34	73	9	10	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	a0003	318	8	1	1	6	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	a0004	318	7	0	0	7	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	a0005	318	3	3	0	0	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	a0006	318	1	0	1	0	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX1_chr14_20450226_20462767	0/0	a0007	318	1	0	0	1	0	0	copy fasta	APEX1	chr14	20450226	20462767
APEX2_chrX_54995363_55014057	1/1	a0001	518	293	71	58	129	9	24	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	a0002	518	3	0	0	0	0	3	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	a0003	518	1	0	0	1	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	a0004	196	1	0	0	1	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	a0005	518	1	0	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	a0006	518	1	1	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	a0007	518	1	0	0	1	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	a0008	518	1	0	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	a0009	518	1	0	0	0	0	1	copy fasta	APEX2	chrX	54995363	55014057
APH1A_chr1_150260404_150274016	1/1	a0001	265	437	93	76	204	16	46	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	a0002	265	3	3	0	0	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1B_chr15_63272605_63314126	1/0	a0001	257	341	96	57	144	8	35	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	a0002	257	63	4	11	46	1	1	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/1	a0003	257	7	0	4	0	2	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	a0004	257	6	0	0	0	0	6	copy fasta	APH1B	chr15	63272605	63314126