JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NBAS_chr2_15161916_15566334	0/0	a0038	2371	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBDY_chrX_56724243_56824179	1/1	a0001	68	160	51	24	61	4	18	copy fasta	NBDY	chrX	56724243	56824179
NBEAL1_chr2_203009875_203230194	0/0	a0001	2723	207	38	43	98	7	21	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	1/0	a0002	2723	33	16	4	10	0	2	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0003	2723	21	17	4	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0004	2723	7	0	0	7	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/1	a0005	2723	5	0	2	0	0	2	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0006	2723	2	2	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0007	2723	2	0	0	0	2	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0008	107	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0009	2723	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0010	2723	1	0	0	0	1	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0011	2723	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0012	2723	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0013	2723	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0014	2723	1	0	1	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0015	2723	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0016	2723	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0017	2723	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0018	2723	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0019	2723	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0020	2723	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0021	2723	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	a0022	704	1	0	0	0	0	1	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL2_chr3_46974666_47014701	1/0	a0001	2754	142	56	19	49	3	14	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0002	2754	108	16	22	50	5	15	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/1	a0003	2754	45	1	11	24	2	6	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0004	2754	29	3	5	19	1	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0005	2754	4	4	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0006	2754	4	0	0	4	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0007	2754	2	0	0	0	0	2	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0008	2754	2	0	0	0	1	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0009	2754	2	0	0	0	0	2	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0010	2754	2	1	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0011	2754	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0012	2754	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0013	2754	1	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0014	919	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0015	2754	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0016	2754	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0017	2754	1	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0018	2754	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0019	2754	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0020	2754	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0021	2754	1	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0022	2754	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0023	2760	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0024	2754	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0025	2754	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	a0026	2754	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701