JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NHERF1_chr17_74743628_74774353	0/0	a0006	358	1	0	0	1	0	0	copy fasta	NHERF1	chr17	74743628	74774353
NHERF2_chr16_2021902_2044026	1/1	a0001	337	397	80	80	171	18	46	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	a0002	337	12	11	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	a0003	337	6	6	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	a0004	337	2	2	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	a0005	337	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	a0006	337	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	a0007	337	1	0	0	1	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	a0008	337	1	1	0	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF2_chr16_2021902_2044026	0/0	a0009	337	1	0	1	0	0	0	copy fasta	NHERF2	chr16	2021902	2044026
NHERF4_chr11_119180475_119195213	0/0	a0001	505	284	61	34	145	7	37	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	1/1	a0002	505	129	31	44	34	9	9	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	a0003	505	2	2	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	a0004	505	2	2	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	a0005	505	1	0	0	1	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	a0006	505	1	1	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	a0007	505	1	1	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	a0008	505	1	0	0	1	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	a0009	505	1	0	0	1	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHLH1_chr1_160362071_160377846	1/1	a0001	133	454	96	84	215	14	43	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	a0002	133	3	0	0	0	0	3	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	a0003	133	1	0	0	1	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH2_chr1_115831377_115846126	1/1	a0001	135	438	98	74	202	16	46	copy fasta	NHLH2	chr1	115831377	115846126
NHLRC1_chr6_18115440_18127677	1/1	a0001	395	310	75	49	140	15	29	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	a0002	395	153	19	31	83	1	19	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	a0003	395	1	0	0	1	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	a0004	395	1	0	0	1	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	a0005	395	1	1	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	a0006	395	1	0	0	1	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	a0007	395	1	1	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC2_chr10_113849661_113922194	1/1	a0001	726	244	62	40	103	11	26	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0002	726	86	13	20	40	5	8	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0003	726	9	9	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0004	726	7	0	0	7	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0005	726	3	3	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0006	726	2	0	0	0	0	2	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0007	726	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0008	726	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0009	726	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0010	726	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0011	726	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0012	726	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	a0013	726	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC3_chr13_39033456_39055109	1/1	a0001	347	393	86	77	167	16	45	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	a0002	347	5	5	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	a0003	347	4	4	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	a0004	347	2	0	1	0	0	1	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	a0005	347	1	1	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	a0006	347	1	0	0	1	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC4_chr16_562005_574495	1/1	a0001	123	417	91	75	181	18	50	copy fasta	NHLRC4	chr16	562005	574495