JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NIPBL_chr5_36871769_37071413	0/0	a0008	2804	1	1	0	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	a0009	2804	1	0	0	1	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	a0010	2804	1	0	1	0	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPBL_chr5_36871769_37071413	0/0	a0011	2804	1	0	0	1	0	0	copy fasta	NIPBL	chr5	36871769	37071413
NIPSNAP1_chr22_29549808_29586113	1/1	a0001	284	376	94	64	160	18	38	copy fasta	NIPSNAP1	chr22	29549808	29586113
NIPSNAP2_chr7_55959585_56005179	1/1	a0001	286	411	91	72	188	16	42	copy fasta	NIPSNAP2	chr7	55959585	56005179
NIPSNAP2_chr7_55959585_56005179	0/0	a0002	286	4	2	2	0	0	0	copy fasta	NIPSNAP2	chr7	55959585	56005179
NIPSNAP2_chr7_55959585_56005179	0/0	a0003	286	1	1	0	0	0	0	copy fasta	NIPSNAP2	chr7	55959585	56005179
NIPSNAP3A_chr9_104742683_104765120	0/1	a0001	247	277	77	56	114	8	21	copy fasta	NIPSNAP3A	chr9	104742683	104765120
NIPSNAP3A_chr9_104742683_104765120	1/0	a0002	247	157	17	24	90	6	19	copy fasta	NIPSNAP3A	chr9	104742683	104765120
NIPSNAP3A_chr9_104742683_104765120	0/0	a0003	95	6	6	0	0	0	0	copy fasta	NIPSNAP3A	chr9	104742683	104765120
NIPSNAP3A_chr9_104742683_104765120	0/0	a0004	247	6	0	0	6	0	0	copy fasta	NIPSNAP3A	chr9	104742683	104765120
NIPSNAP3B_chr9_104759129_104782764	1/1	a0001	247	299	85	60	108	13	31	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	a0002	247	84	1	13	54	3	13	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	a0003	247	58	5	4	49	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	a0004	247	3	3	0	0	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	a0005	247	2	2	0	0	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	a0006	247	2	2	0	0	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	a0007	247	1	0	0	0	0	1	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	a0008	247	1	0	0	0	0	1	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	a0009	247	1	0	0	1	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	a0010	247	1	0	1	0	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NISCH_chr3_52450604_52498068	0/1	a0001	1504	205	20	47	101	6	30	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0002	1504	83	61	12	3	4	3	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0003	1504	3	0	0	3	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0004	1504	3	0	0	3	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0005	1504	3	2	1	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0006	1504	2	0	0	2	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0007	1504	2	0	0	1	0	1	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	1/0	a0008	1504	2	0	1	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0009	1504	1	0	1	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0010	1504	1	0	0	1	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0011	1504	1	1	0	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0012	1504	1	0	0	0	0	1	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	a0013	1504	1	0	0	0	0	1	copy fasta	NISCH	chr3	52450604	52498068
NIT1_chr1_161113105_161126194	1/1	a0001	327	291	49	52	152	16	20	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	a0002	327	42	15	4	21	2	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	a0003	327	2	0	2	0	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	a0004	327	1	0	1	0	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	a0005	327	1	0	0	1	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	a0006	327	1	0	1	0	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT2_chr3_100329757_100366635	0/0	a0001	276	394	80	72	184	12	46	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	a0002	276	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	a0003	276	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NKAIN1_chr1_31174745_31244887	1/1	a0001	207	336	84	68	132	14	36	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	a0002	207	1	0	0	1	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	a0003	207	1	0	0	1	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN2_chr6_123798865_124830640	0/0	a0001	208	65	50	7	2	0	6	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN2_chr6_123798865_124830640	0/0	a0002	208	1	0	1	0	0	0	copy fasta	NKAIN2	chr6	123798865	124830640
NKAIN3_chr8_62243854_62989904	0/0	a0001	218	108	49	22	26	6	5	copy fasta	NKAIN3	chr8	62243854	62989904