JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NLGN3_chrX_71139841_71176201	0/0	a0003	848	1	1	0	0	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	a0004	848	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	a0005	818	1	1	0	0	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	a0006	848	1	0	0	0	0	1	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	a0007	607	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN3_chrX_71139841_71176201	0/0	a0008	360	1	0	0	1	0	0	copy fasta	NLGN3	chrX	71139841	71176201
NLGN4X_chrX_5885042_6233867	1/1	a0001	816	127	8	20	78	5	14	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	a0002	490	1	0	0	1	0	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4Y_chrY_14519529_14850654	1/1	a0001	836	120	18	20	60	5	15	copy fasta	NLGN4Y	chrY	14519529	14850654
NLGN4Y_chrY_14519529_14850654	0/0	a0002	836	1	0	0	1	0	0	copy fasta	NLGN4Y	chrY	14519529	14850654
NLK_chr17_28037677_28201381	1/1	a0001	527	105	43	16	32	4	8	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	a0002	527	2	0	2	0	0	0	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	a0003	527	1	1	0	0	0	0	copy fasta	NLK	chr17	28037677	28201381
NLN_chr5_65717205_65834283	1/1	a0001	704	292	56	63	126	14	31	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	a0002	704	25	21	3	0	0	1	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	a0003	704	7	6	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	a0004	704	6	6	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	a0005	704	2	1	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	a0006	704	2	2	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	a0007	704	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	a0008	704	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLRC3_chr16_3534033_3582403	1/1	a0001	1065	283	52	51	137	11	30	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0002	1065	30	11	3	10	1	5	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0003	1065	23	0	5	13	2	3	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0004	1065	13	0	10	3	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0005	1065	13	13	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0006	1065	5	5	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0007	1065	3	2	1	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0008	1065	3	1	2	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0009	1065	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0010	1065	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0011	1065	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0012	1065	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0013	1065	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0014	1065	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0015	1065	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0016	1065	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0017	1058	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0018	1065	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0019	1065	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0020	1065	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0021	1065	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0022	1065	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0023	1065	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0024	1065	1	0	0	1	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0025	1065	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0026	1065	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0027	1065	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	a0028	1065	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC4_chr2_32219453_32269886	1/1	a0001	1010	386	88	68	178	14	36	copy fasta	NLRC4	chr2	32219453	32269886