Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
A2ML1_chr12_8817621_8881787	0/0	a0038	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0039	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0040	1454	1	1	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	a0041	1454	1	0	1	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2M_chr12_9062708_9120919	0/1	a0001	1474	242	58	33	110	7	33	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0002	1474	63	16	22	14	2	9	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0003	1474	8	0	8	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0004	1474	4	0	1	0	1	2	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	1/0	a0005	1474	3	2	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0006	1474	2	0	0	2	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0007	1474	1	0	0	1	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0008	1474	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0009	1474	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0010	1474	1	0	1	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0011	1474	1	0	1	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0012	1474	1	0	0	1	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0013	1474	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0014	1474	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0015	1474	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	a0016	1474	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A3GALT2_chr1_33301766_33326098	1/1	a0001	340	398	84	62	187	15	48	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0002	196	4	4	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0003	340	3	2	1	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0004	340	2	2	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0005	340	2	2	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0006	340	2	2	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0007	25	2	0	1	1	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0008	340	1	0	0	1	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0009	340	1	0	0	1	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0010	340	1	1	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0011	340	1	0	0	0	1	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	a0012	340	1	1	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A4GALT_chr22_42687121_42725870	1/0	a0001	353	274	36	57	150	7	23	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/1	a0002	353	114	44	20	24	11	14	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	a0003	353	6	0	0	6	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	a0004	353	6	6	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	a0005	353	5	4	1	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	a0006	353	1	0	0	0	0	1	copy fasta	A4GALT	chr22	42687121	42725870
A4GNT_chr3_138118713_138137390	0/0	a0001	340	238	60	48	98	7	25	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	1/1	a0002	340	151	31	16	81	4	17	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	a0003	340	3	2	1	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	a0004	340	2	0	1	0	1	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	a0005	340	2	2	0	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	a0006	340	1	0	0	1	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	a0007	340	1	1	0	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
AAAS_chr12_53302460_53326610	1/1	a0001	546	322	88	66	118	10	38	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	a0002	546	6	4	2	0	0	0	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	a0003	546	2	0	0	2	0	0	copy fasta	AAAS	chr12	53302460	53326610
AACS_chr12_125060435_125148316	1/0	a0001	672	273	54	58	120	12	28	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/1	a0002	672	83	33	10	24	2	13	copy fasta	AACS	chr12	125060435	125148316