JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPIPA5_chr16_15358628_15383294	0/0	a0014	350	1	0	0	0	0	1	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0015	327	1	0	0	0	0	1	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0016	350	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0017	350	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0018	327	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0019	369	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0020	369	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0021	350	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0022	350	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	a0023	350	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA7_chr16_16374140_16398972	0/0	a0001	369	82	16	24	25	3	14	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0002	369	15	2	1	8	0	4	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0003	369	13	1	3	9	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0004	369	10	2	1	4	0	3	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0005	369	4	0	0	1	1	2	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0006	369	2	0	0	2	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0007	346	1	0	0	1	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0008	369	1	1	0	0	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0009	346	1	0	1	0	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0010	369	1	0	0	1	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0011	369	1	0	0	1	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	a0012	369	1	0	0	0	0	1	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA8_chr16_18312919_18341736	0/0	a0001	369	26	7	4	14	1	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	a0002	369	6	0	1	5	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	a0003	369	3	0	1	2	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	a0004	369	2	0	0	2	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	a0005	369	1	1	0	0	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	a0006	369	1	0	0	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	a0007	369	1	0	0	0	1	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPB11_chr16_29376310_29411711	0/0	a0001	1077	67	16	12	29	1	9	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0002	1161	45	3	1	38	0	3	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0003	974	43	0	6	36	1	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/1	a0004	1077	13	0	7	0	3	2	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0005	1077	12	12	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0006	1077	11	2	9	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0007	951	10	0	5	0	4	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0008	1035	9	6	1	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0009	1161	9	0	0	9	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0010	1077	8	0	0	8	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0011	1035	7	0	2	0	2	3	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0012	1119	6	0	1	4	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0013	1077	5	0	4	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0014	1077	5	1	0	3	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0015	1203	5	0	0	5	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0016	932	5	5	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0017	993	4	1	0	2	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0018	1077	4	0	0	3	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0019	1035	4	1	2	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0020	993	4	4	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	1/0	a0021	1161	3	1	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711