JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPIPB11_chr16_29376310_29411711	0/0	a0022	970	3	0	3	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0023	1035	3	1	0	1	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0024	1077	3	3	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0025	993	3	0	3	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0026	1160	3	0	0	3	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0027	1142	3	0	0	0	0	3	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0028	1058	3	0	3	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0029	932	3	3	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0030	1119	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0031	1119	2	0	2	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0032	1077	2	0	0	0	0	2	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0033	1035	2	0	2	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0034	1119	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0035	1076	2	0	1	0	1	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0036	1035	2	0	0	0	0	2	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0037	1077	2	0	1	0	1	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0038	1077	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0039	894	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0040	1077	2	0	0	0	0	2	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0041	1035	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0042	890	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0043	890	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0044	848	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0045	932	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0046	974	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0047	875	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0048	1161	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0049	1077	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0050	993	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0051	1077	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0052	894	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0053	752	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0054	993	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0055	1077	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0056	978	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0057	516	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0058	1119	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0059	1119	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0060	1077	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0061	1035	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0062	1073	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0063	1031	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0064	1073	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0065	1077	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0066	1035	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0067	1077	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0068	992	1	0	0	0	1	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0069	909	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0070	993	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0071	878	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711