JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NPIPB11_chr16_29376310_29411711	0/0	a0122	848	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0123	974	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0124	1077	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0125	909	1	0	0	0	1	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0126	993	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0127	993	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0128	1077	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0129	1077	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0130	974	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0131	1016	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0132	791	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0133	974	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0134	1161	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	a0135	76	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB12_chr16_29478534_29511408	0/0	a0001	970	6	0	3	3	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	a0002	1012	4	0	3	0	1	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	a0003	928	3	0	1	2	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	a0004	928	2	0	2	0	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	a0005	636	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	a0006	512	1	0	0	0	1	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	a0007	846	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	1/0	a0008	928	1	0	0	0	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	a0009	1012	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	a0010	1012	1	0	1	0	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB13_chr16_30217897_30253479	0/0	a0001	1058	26	2	9	13	1	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0002	1180	19	4	2	10	1	2	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0003	1100	17	2	3	12	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0004	1138	10	1	1	6	1	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0005	1161	5	0	3	1	1	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0006	1203	4	4	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0007	1119	4	0	3	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0008	1096	3	0	0	1	2	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0009	1077	2	2	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0010	1180	2	0	0	1	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0011	1016	2	0	0	2	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0012	1161	2	2	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0013	1058	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0014	535	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0015	1161	1	0	0	0	1	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0016	1119	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0017	1161	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0018	1161	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0019	1119	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0020	1119	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0021	1180	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0022	1682	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0023	1138	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0024	1184	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0025	1138	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	a0026	1134	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479