JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OBSCN_chr1_228203044_228383876	0/0	a0120	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0121	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0122	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0123	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0124	8925	1	0	0	0	1	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0125	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0126	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0127	8925	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0128	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0129	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0130	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0131	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0132	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0133	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0134	8925	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0135	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0136	8925	1	0	0	0	0	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0137	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0138	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0139	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0140	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0141	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0142	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0143	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0144	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0145	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0146	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0147	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0148	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0149	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0150	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0151	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0152	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0153	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0154	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0155	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0156	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0157	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0158	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0159	8925	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0160	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0161	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0162	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0163	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0164	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0165	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0166	8925	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0167	8925	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSL1_chr2_219545728_219576539	0/1	a0001	1896	101	7	19	46	5	23	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0002	1896	73	11	21	32	3	6	copy fasta	OBSL1	chr2	219545728	219576539