JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OBSL1_chr2_219545728_219576539	0/0	a0003	1896	50	15	10	20	1	4	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0004	1896	46	9	9	17	3	8	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	1/0	a0005	1896	10	8	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0006	1896	9	0	0	9	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0007	1896	7	5	0	1	1	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0008	1896	7	5	1	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0009	1896	6	0	0	6	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0010	1896	6	6	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0011	1896	5	0	4	0	1	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0012	1896	5	5	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0013	1896	4	0	3	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0014	1896	4	0	0	4	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0015	1896	4	0	0	4	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0016	1896	3	3	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0017	1896	3	3	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0018	1896	3	3	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0019	1896	2	0	0	2	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0020	1896	2	2	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0021	1896	2	2	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0022	1896	2	1	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0023	1896	2	0	0	2	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0024	1896	2	0	0	2	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0025	1896	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0026	1896	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0027	1896	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0028	1896	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0029	1896	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0030	1896	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0031	1896	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0032	1896	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0033	1896	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0034	1896	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0035	1896	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0036	1896	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0037	1896	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0038	1896	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0039	1896	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0040	1896	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0041	1896	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0042	1896	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0043	1896	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0044	1896	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0045	1896	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	a0046	1896	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OC90_chr8_132019216_132064382	0/1	a0001	477	299	61	51	146	10	30	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	1/0	a0002	477	78	26	20	19	3	9	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	a0003	477	15	0	0	14	1	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	a0004	477	9	7	2	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	a0005	477	2	0	0	0	0	2	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	a0006	477	1	0	1	0	0	0	copy fasta	OC90	chr8	132019216	132064382