JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OPN1LW_chrX_154139243_154164032	0/0	a0015	364	2	0	0	2	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0016	364	2	0	0	0	0	2	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0017	364	2	2	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0018	364	2	2	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0019	161	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0020	364	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0021	364	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0022	364	1	0	0	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0023	324	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0024	364	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0025	364	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0026	364	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0027	364	1	0	0	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0028	364	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0029	364	1	0	0	0	1	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0030	256	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0031	341	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0032	364	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0033	364	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0034	364	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0035	364	1	0	0	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1MW2_chrX_154214756_154238286	0/0	a0001	364	36	1	4	22	0	9	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0002	364	31	13	6	9	1	2	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0003	364	8	1	1	6	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0004	364	7	6	1	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0005	364	5	0	2	2	1	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0006	364	5	0	0	5	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0007	364	3	3	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0008	364	2	2	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0009	364	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0010	364	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0011	364	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0012	364	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0013	256	1	0	1	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0014	256	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0015	364	1	0	0	0	0	1	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0016	364	1	0	1	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0017	364	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0018	364	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0019	364	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0020	364	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0021	364	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	a0022	364	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW3_chrX_154252582_154276090	0/0	a0001	364	2	2	0	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	a0002	19	1	0	0	1	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	a0003	161	1	1	0	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	a0004	364	1	0	0	1	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	a0005	364	1	0	1	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	a0006	257	1	1	0	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW_chrX_154177596_154201861	0/0	a0001	364	38	1	6	26	1	4	copy fasta	OPN1MW	chrX	154177596	154201861