Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

Item	Value
geneid	101060233
ensemblid	ENSG00000269433.4
hgncid	51831
symbol	OPN1MW3
name	opsin 1, medium wave sensitive 3
refseq_nuc	NM_001330067.2
refseq_prot	NP_001316996.1
ensembl_nuc	ENST00000599405.4
ensembl_prot	ENSP00000469970.1
mane_status	MANE Select
chr	chrX
start	154257582
end	154271090
strand	+
ver	v1.2
region	chrX:154257582-154271090
region5000	chrX:154252582-154276090
regionname0	OPN1MW3_chrX_154257582_154271090
regionname5000	OPN1MW3_chrX_154252582_154276090

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	364	2	0	0	2	1	OPN1MW3_chrX_154252582_154276090	OPN1MW3	MAQQW others(359): Show MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPNYHIAPR WVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL AETVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWE RWMVVCKPFGNVRFDAKLAIVGIAFSWIWAAVWTAPPIFGWSRYWPHGLK TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVA KQQKESESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYPFH PLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLFGKKVDDGSELSSA SKTEVSSVSSVSPA	chrX	154252582	154276090
a0002	0/0	364	2	1	1	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	MAQQW others(359): Show MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPNYHIAPR WVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL AETVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWE RWMVVCKPFGNVRFDAKLAIVGIVFSWVWAAVWTAPPIFGWSRYWPHGLK TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVA KQQKESESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYPFH PLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLFGKKVDDGSELSSA SKTEVSSVSSVSPA	chrX	154252582	154276090
a0003	0/0	364	2	2	0	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	MAQQW others(359): Show MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPNYHIAPR WVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL AETVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWE RWMVVCKPFGNVRFDAKLAIVGIVFSWIWAAVWTAPPIFGWSRYWPHGLK TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVA KQQKESESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYPFH PLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLFGKKVDDGSELSSA SKTEVSSVSSVSPA	chrX	154252582	154276090
a0004	0/0	364	1	1	0	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	MAQQW others(359): Show MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPNYHIAPR WVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL AETVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWE RWMVVCKPFGNVRFDAKLAIVGIVFSWVWAAVWTAPPIFGWSRYWPHGLK TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVA KQQKESESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYPFH PLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLFGKKVDDGFELSSA SKTEVSSVSSVSPA	chrX	154252582	154276090

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	regionname	genename	cseq	chr	start	end
a0001c0002	0/0	1092	1	0	0	1	OPN1MW3_chrX_154252582_154276090	OPN1MW3	ATGGC others(1087): Show ATGGCCCAGCAGTGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGA CAGCTATGAGGACAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCA ACTCCACCAGAGGCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGA TGGGTGTACCACCTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATC CGTCTTCACAAATGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGC TGCGCCACCCGCTGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTG GCAGAGACCGTCATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGG CTACTTCGTGCTGGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCT CCCTGTGTGGGATCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAG AGATGGATGGTGGTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAA GCTGGCCATCGTGGGCATTGCCTTCTCCTGGATCTGGGCTGCTGTGTGGA CAGCCCCGCCCATCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAG ACTTCATGCGGCCCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCA GTCTTACATGATTGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCA TCATCGTGCTCTGCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCA AAGCAGCAGAAAGAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGAC GCGCATGGTGGTGGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCAT ACGCCTTCTTCGCATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCAC CCTTTGATGGCTGCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTA CAACCCCGTTATCTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCT TGCAGCTTTTCGGGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCC TCCAAAACGGAGGTCTCATCTGTGTCCTCGGTATCGCCTGCA	chrX	154252582	154276090
a0001c0006	0/0	1092	1	0	0	1	OPN1MW3_chrX_154252582_154276090	OPN1MW3	ATGGC others(1087): Show ATGGCCCAGCAGTGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGA CAGCTATGAGGACAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCA ACTCCACCAGAGGCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGA TGGGTGTACCACCTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATC CGTCTTCACAAATGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGC TGCGCCACCCGCTGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTG GCAGAGACCGTCATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGG CTACTTCGTGCTGGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCT CCCTGTGTGGGATCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAG AGATGGATGGTGGTGTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAA GCTGGCCATCGTGGGCATTGCCTTCTCCTGGATCTGGGCTGCTGTGTGGA CAGCCCCGCCCATCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAG ACTTCATGCGGCCCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCA GTCTTACATGATTGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCA TCATCGTGCTCTGCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCA AAGCAGCAGAAAGAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGAC GCGCATGGTGGTGGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCCT ACGCCTTCTTCGCATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCAC CCTTTGATGGCTGCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTA CAACCCCGTTATCTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCT TGCAGCTTTTCGGGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCC TCCAAAACGGAGGTCTCATCTGTGTCCTCGGTATCGCCTGCA	chrX	154252582	154276090
a0002c0003	0/0	1092	1	1	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	ATGGC others(1087): Show ATGGCCCAGCAGTGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGA CAGCTATGAGGACAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCA ACTCCACCAGAGGCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGA TGGGTGTACCACCTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATC CGTCTTCACAAATGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGC TGCGCCACCCGCTGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTG GCAGAGACCGTCATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGG CTACTTCGTGCTGGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCT CCCTGTGTGGGATCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAG AGATGGATGGTGGTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAA GCTGGCCATCGTGGGCATTGTCTTCTCCTGGGTCTGGGCTGCTGTGTGGA CAGCCCCGCCCATCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAG ACTTCATGCGGCCCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCA GTCTTACATGATTGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCA TCATCGTGCTCTGCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCA AAGCAGCAGAAAGAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGAC GCGCATGGTGGTGGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCAT ACGCCTTCTTCGCATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCAC CCTTTGATGGCTGCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTA CAACCCCGTTATCTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCT TGCAGCTTTTCGGGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCC TCCAAAACGGAGGTCTCATCTGTGTCCTCGGTATCGCCTGCA	chrX	154252582	154276090
a0002c0004	0/0	1092	1	0	1	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	ATGGC others(1087): Show ATGGCCCAGCAGTGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGA CAGCTATGAGGACAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCA ACTCCACCAGAGGCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGA TGGGTGTACCACCTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATC CGTCTTCACAAATGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGC TGCGCCACCCGCTGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTG GCAGAGACCGTCATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGG CTACTTCGTGCTGGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCT CCCTGTGTGGGATCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAG AGATGGATGGTGGTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAA GCTGGCCATCGTGGGCATTGTCTTCTCCTGGGTCTGGGCTGCTGTGTGGA CAGCCCCGCCCATCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAG ACTTCATGCGGCCCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCA GTCTTACATGATTGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCA TCATCGTGCTCTGCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCA AAGCAGCAGAAAGAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGAC GCGCATGGTGGTGGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCCT ACGCCTTCTTCGCATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCAC CCTTTGATGGCTGCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTA CAACCCCGTTATCTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCT TGCAGCTTTTCGGGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCC TCCAAAACGGAGGTCTCATCTGTGTCCTCGGTATCGCCTGCA	chrX	154252582	154276090
a0003c0001	0/0	1092	2	2	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	ATGGC others(1087): Show ATGGCCCAGCAGTGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGA CAGCTATGAGGACAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCA ACTCCACCAGAGGCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGA TGGGTGTACCACCTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATC CGTCTTCACAAATGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGC TGCGCCACCCGCTGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTG GCAGAGACCGTCATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGG CTACTTCGTGCTGGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCT CCCTGTGTGGGATCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAG AGATGGATGGTGGTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAA GCTGGCCATCGTGGGCATTGTCTTCTCCTGGATCTGGGCTGCTGTGTGGA CAGCCCCGCCCATCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAG ACTTCATGCGGCCCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCA GTCTTACATGATTGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCA TCATCGTGCTCTGCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCA AAGCAGCAGAAAGAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGAC GCGCATGGTGGTGGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCCT ACGCCTTCTTCGCATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCAC CCTTTGATGGCTGCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTA CAACCCCGTTATCTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCT TGCAGCTTTTCGGGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCC TCCAAAACGGAGGTCTCATCTGTGTCCTCGGTATCGCCTGCA	chrX	154252582	154276090
a0004c0005	0/0	1092	1	1	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	ATGGC others(1087): Show ATGGCCCAGCAGTGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGA CAGCTATGAGGACAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCA ACTCCACCAGAGGCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGA TGGGTGTACCACCTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATC CGTCTTCACAAATGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGC TGCGCCACCCGCTGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTG GCAGAGACCGTCATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGG CTACTTCGTGCTGGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCT CCCTGTGTGGGATCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAG AGATGGATGGTGGTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAA GCTGGCCATCGTGGGCATTGTCTTCTCCTGGGTCTGGGCTGCTGTGTGGA CAGCCCCGCCCATCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAG ACTTCATGCGGCCCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCA GTCTTACATGATTGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCA TCATCGTGCTCTGCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCA AAGCAGCAGAAAGAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGAC GCGCATGGTGGTGGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCCT ACGCCTTCTTCGCATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCAC CCTTTGATGGCTGCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTA CAACCCCGTTATCTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCT TGCAGCTTTTCGGGAAGAAGGTTGACGATGGCTTTGAACTCTCCAGCGCC TCCAAAACGGAGGTCTCATCTGTGTCCTCGGTATCGCCTGCA	chrX	154252582	154276090

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	regionname	genename	tseq	chr	start	end
a0001c0002t0001	0/0	1239	1	0	0	1	OPN1MW3_chrX_154252582_154276090	OPN1MW3	AGGGC others(1234): Show AGGGCCGGCTGCCGTCGGGGACAGGGCTTTCCATAGCCATGGCCCAGCAG TGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGACAGCTATGAGGA CAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCAACTCCACCAGAG GCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGATGGGTGTACCAC CTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATCCGTCTTCACAAA TGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGCTGCGCCACCCGC TGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTGGCAGAGACCGTC ATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGGCTACTTCGTGCT GGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCTCCCTGTGTGGGA TCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAGAGATGGATGGTG GTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAAGCTGGCCATCGT GGGCATTGCCTTCTCCTGGATCTGGGCTGCTGTGTGGACAGCCCCGCCCA TCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAGACTTCATGCGGC CCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCAGTCTTACATGAT TGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCATCATCGTGCTCT GCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCAAAGCAGCAGAAA GAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGACGCGCATGGTGGT GGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCATACGCCTTCTTCG CATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCACCCTTTGATGGCT GCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTACAACCCCGTTAT CTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCTTGCAGCTTTTCG GGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCCTCCAAAACGGAG GTCTCATCTGTGTCCTCGGTATCGCCTGCATGAGGTCTGCCTCCTACCCA TCCCGCCCACCGGGGCTTTGGCCACCTCTCCTTTCCCCCTCCTTCTCCAT CCCTGTAAAATAAATGTAATTTATCTTTGCCAAAACCAA	chrX	154252582	154276090
a0001c0006t0001	0/0	1239	1	0	0	1	OPN1MW3_chrX_154252582_154276090	OPN1MW3	AGGGC others(1234): Show AGGGCCGGCTGCCGTCGGGGACAGGGCTTTCCATAGCCATGGCCCAGCAG TGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGACAGCTATGAGGA CAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCAACTCCACCAGAG GCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGATGGGTGTACCAC CTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATCCGTCTTCACAAA TGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGCTGCGCCACCCGC TGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTGGCAGAGACCGTC ATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGGCTACTTCGTGCT GGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCTCCCTGTGTGGGA TCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAGAGATGGATGGTG GTGTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAAGCTGGCCATCGT GGGCATTGCCTTCTCCTGGATCTGGGCTGCTGTGTGGACAGCCCCGCCCA TCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAGACTTCATGCGGC CCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCAGTCTTACATGAT TGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCATCATCGTGCTCT GCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCAAAGCAGCAGAAA GAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGACGCGCATGGTGGT GGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCCTACGCCTTCTTCG CATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCACCCTTTGATGGCT GCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTACAACCCCGTTAT CTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCTTGCAGCTTTTCG GGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCCTCCAAAACGGAG GTCTCATCTGTGTCCTCGGTATCGCCTGCATGAGGTCTGCCTCCTACCCA TCCCGCCCACCGGGGCTTTGGCCACCTCTCCTTTCCCCCTCCTTCTCCAT CCCTGTAAAATAAATGTAATTTATCTTTGCCAAAACCAA	chrX	154252582	154276090
a0002c0003t0001	0/0	1239	1	1	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	AGGGC others(1234): Show AGGGCCGGCTGCCGTCGGGGACAGGGCTTTCCATAGCCATGGCCCAGCAG TGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGACAGCTATGAGGA CAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCAACTCCACCAGAG GCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGATGGGTGTACCAC CTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATCCGTCTTCACAAA TGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGCTGCGCCACCCGC TGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTGGCAGAGACCGTC ATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGGCTACTTCGTGCT GGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCTCCCTGTGTGGGA TCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAGAGATGGATGGTG GTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAAGCTGGCCATCGT GGGCATTGTCTTCTCCTGGGTCTGGGCTGCTGTGTGGACAGCCCCGCCCA TCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAGACTTCATGCGGC CCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCAGTCTTACATGAT TGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCATCATCGTGCTCT GCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCAAAGCAGCAGAAA GAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGACGCGCATGGTGGT GGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCATACGCCTTCTTCG CATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCACCCTTTGATGGCT GCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTACAACCCCGTTAT CTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCTTGCAGCTTTTCG GGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCCTCCAAAACGGAG GTCTCATCTGTGTCCTCGGTATCGCCTGCATGAGGTCTGCCTCCTACCCA TCCCGCCCACCGGGGCTTTGGCCACCTCTCCTTTCCCCCTCCTTCTCCAT CCCTGTAAAATAAATGTAATTTATCTTTGCCAAAACCAA	chrX	154252582	154276090
a0002c0004t0001	0/0	1239	1	0	1	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	AGGGC others(1234): Show AGGGCCGGCTGCCGTCGGGGACAGGGCTTTCCATAGCCATGGCCCAGCAG TGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGACAGCTATGAGGA CAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCAACTCCACCAGAG GCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGATGGGTGTACCAC CTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATCCGTCTTCACAAA TGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGCTGCGCCACCCGC TGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTGGCAGAGACCGTC ATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGGCTACTTCGTGCT GGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCTCCCTGTGTGGGA TCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAGAGATGGATGGTG GTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAAGCTGGCCATCGT GGGCATTGTCTTCTCCTGGGTCTGGGCTGCTGTGTGGACAGCCCCGCCCA TCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAGACTTCATGCGGC CCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCAGTCTTACATGAT TGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCATCATCGTGCTCT GCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCAAAGCAGCAGAAA GAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGACGCGCATGGTGGT GGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCCTACGCCTTCTTCG CATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCACCCTTTGATGGCT GCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTACAACCCCGTTAT CTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCTTGCAGCTTTTCG GGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCCTCCAAAACGGAG GTCTCATCTGTGTCCTCGGTATCGCCTGCATGAGGTCTGCCTCCTACCCA TCCCGCCCACCGGGGCTTTGGCCACCTCTCCTTTCCCCCTCCTTCTCCAT CCCTGTAAAATAAATGTAATTTATCTTTGCCAAAACCAA	chrX	154252582	154276090
a0003c0001t0001	0/0	1239	2	2	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	AGGGC others(1234): Show AGGGCCGGCTGCCGTCGGGGACAGGGCTTTCCATAGCCATGGCCCAGCAG TGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGACAGCTATGAGGA CAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCAACTCCACCAGAG GCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGATGGGTGTACCAC CTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATCCGTCTTCACAAA TGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGCTGCGCCACCCGC TGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTGGCAGAGACCGTC ATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGGCTACTTCGTGCT GGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCTCCCTGTGTGGGA TCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAGAGATGGATGGTG GTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAAGCTGGCCATCGT GGGCATTGTCTTCTCCTGGATCTGGGCTGCTGTGTGGACAGCCCCGCCCA TCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAGACTTCATGCGGC CCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCAGTCTTACATGAT TGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCATCATCGTGCTCT GCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCAAAGCAGCAGAAA GAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGACGCGCATGGTGGT GGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCCTACGCCTTCTTCG CATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCACCCTTTGATGGCT GCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTACAACCCCGTTAT CTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCTTGCAGCTTTTCG GGAAGAAGGTTGACGATGGCTCTGAACTCTCCAGCGCCTCCAAAACGGAG GTCTCATCTGTGTCCTCGGTATCGCCTGCATGAGGTCTGCCTCCTACCCA TCCCGCCCACCGGGGCTTTGGCCACCTCTCCTTTCCCCCTCCTTCTCCAT CCCTGTAAAATAAATGTAATTTATCTTTGCCAAAACCAA	chrX	154252582	154276090
a0004c0005t0002	0/0	1239	1	1	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	AGGGC others(1234): Show AGGGCCGGCTGCCGTCGGGGACAGGGCTTTCCATAGCCATGGCCCAGCAG TGGAGCCTCCAAAGGCTCGCAGGCCGCCATCCGCAGGACAGCTATGAGGA CAGCACCCAGTCCAGCATCTTCACCTACACCAACAGCAACTCCACCAGAG GCCCCTTCGAAGGCCCGAATTACCACATCGCTCCCAGATGGGTGTACCAC CTCACCAGTGTCTGGATGATCTTTGTGGTCATTGCATCCGTCTTCACAAA TGGGCTTGTGCTGGCGGCCACCATGAAGTTCAAGAAGCTGCGCCACCCGC TGAACTGGATCCTGGTGAACCTGGCGGTCGCTGACCTGGCAGAGACCGTC ATCGCCAGCACTATCAGCGTTGTGAACCAGGTCTATGGCTACTTCGTGCT GGGCCACCCTATGTGTGTCCTGGAGGGCTACACCGTCTCCCTGTGTGGGA TCACAGGTCTCTGGTCTCTGGCCATCATTTCCTGGGAGAGATGGATGGTG GTCTGCAAGCCCTTTGGCAATGTGAGATTTGATGCCAAGCTGGCCATCGT GGGCATTGTCTTCTCCTGGGTCTGGGCTGCTGTGTGGACAGCCCCGCCCA TCTTTGGTTGGAGCAGGTACTGGCCCCACGGCCTGAAGACTTCATGCGGC CCAGACGTGTTCAGCGGCAGCTCGTACCCCGGGGTGCAGTCTTACATGAT TGTCCTCATGGTCACCTGCTGCATCACCCCACTCAGCATCATCGTGCTCT GCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTGGCAAAGCAGCAGAAA GAGTCTGAATCCACCCAGAAGGCAGAGAAGGAAGTGACGCGCATGGTGGT GGTGATGGTCCTGGCATTCTGCTTCTGCTGGGGACCCTACGCCTTCTTCG CATGCTTTGCTGCTGCCAACCCTGGCTACCCCTTCCACCCTTTGATGGCT GCCCTGCCGGCCTTCTTTGCCAAAAGTGCCACTATCTACAACCCCGTTAT CTATGTCTTTATGAACCGGCAGTTTCGAAACTGCATCTTGCAGCTTTTCG GGAAGAAGGTTGACGATGGCTTTGAACTCTCCAGCGCCTCCAAAACGGAG GTCTCATCTGTGTCCTCGGTATCGCCTGCATGAGGTCTGCCTCCTACCCA TCCCGCCCACCGGGGCTTTGGCCACCTCTCCTTTCCCCCTCCTTCTCCAG CCCTGTAAAATAAATGTAATTTATCTTTGCCAAAACCAA	chrX	154252582	154276090

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	regionname	genename	chr	start	end
a0001c0002t0001g0005	0/0	1	0	0	1	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
a0001c0006t0001g0007	0/0	1	0	0	1	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
a0002c0003t0001g0002	0/0	1	1	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
a0002c0004t0001g0006	0/0	1	0	1	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
a0003c0001t0001g0001	0/0	1	1	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
a0003c0001t0001g0004	0/0	1	1	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
a0004c0005t0002g0003	0/0	1	1	0	0	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00621	hp1	a0001	c0006	t0001	g0007	EAS	CHS	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
HG00642	hp1	a0002	c0004	t0001	g0006	AMR	PUR	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
HG02145	hp1	a0004	c0005	t0002	g0003	AFR	ACB	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
HG02572	hp1	a0003	c0001	t0001	g0004	AFR	GWD	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
HG02717	hp1	a0003	c0001	t0001	g0001	AFR	GWD	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
NA18970	hp1	a0001	c0002	t0001	g0005	EAS	JPT	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090
HG02486	hp1	a0002	c0003	t0001	g0002	AFR	ACB	OPN1MW3_chrX_154252582_154276090	OPN1MW3	chrX	154252582	154276090

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:154265107	C C	T T	3	a0002 a0003 a0004 a0002 a0003 a0004	5	HG00642.hp1 HG02145.hp1 HG02486.hp1 others(2): Show HG00642.hp1 HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1	missense_variant	MODERATE	c.521C>T c.521C>T	p.Ala174Val p.Ala174Val	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/6	559/1239	521/1095	174/364	chrX	154265107
chrX:154265118	A A	G G	2	a0002 a0004 a0002 a0004	3	HG00642.hp1 HG02145.hp1 HG02486.hp1 HG00642.hp1 HG02145.hp1 HG02486.hp1	missense_variant	MODERATE	c.532A>G c.532A>G	p.Ile178Val p.Ile178Val	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/6	570/1239	532/1095	178/364	chrX	154265118
chrX:154270923	C C	T T	1	a0004 a0004	1	HG02145.hp1 HG02145.hp1	missense_variant	MODERATE	c.1034C>T c.1034C>T	p.Ser345Phe p.Ser345Phe	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	6/6	1072/1239	1034/1095	345/364	chrX	154270923

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:154265051	C C	G G	1	a0001c0006 a0001c0006	1	HG00621.hp1 HG00621.hp1	synonymous_variant	LOW	c.465C>G c.465C>G	p.Val155Val p.Val155Val	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/6	503/1239	465/1095	155/364			chrX	154265051
	chrX:154268456	C C	A A	2	a0001c0002 a0002c0003 a0001c0002 a0002c0003	2	HG02486.hp1 NA18970.hp1 HG02486.hp1 NA18970.hp1	synonymous_variant	LOW	c.849C>A c.849C>A	p.Pro283Pro p.Pro283Pro	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	5/6	887/1239	849/1095	283/364			chrX	154268456

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:154271051	T T	G G	1	a0004c0005t0002 a0004c0005t0002	1	HG02145.hp1 HG02145.hp1	3_prime_UTR_variant	MODIFIER	c.67T>G c.67T>G		OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	6/6				67		chrX	154271051

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:154258207	G G	A A	1	a0003c0001t0001g0001 a0003c0001t0001g0001	1	HG02717.hp1 HG02717.hp1	intron_variant	MODIFIER	c.112+476G>A c.112+476G>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154258207
chrX:154258432	G G	A A	4	a0002c0003t0001g0002 a0003c0001t0001g0001 a0003c0001t0001g0004 others(1): Show a0002c0003t0001g0002 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	4	HG02145.hp1 HG02486.hp1 HG02572.hp1 others(1): Show HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.112+701G>A c.112+701G>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154258432
chrX:154258624	A A	C C	1	a0001c0006t0001g0007 a0001c0006t0001g0007	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.112+893A>C c.112+893A>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154258624
chrX:154260429	C C	T T	5	a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 others(2): Show a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	5	HG00642.hp1 HG02145.hp1 HG02486.hp1 others(2): Show HG00642.hp1 HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.113-2283C>T c.113-2283C>T	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154260429
chrX:154260551	G G	A A	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.113-2161G>A c.113-2161G>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154260551
chrX:154260576	GC GC	G G	2	a0003c0001t0001g0001 a0003c0001t0001g0004 a0003c0001t0001g0001 a0003c0001t0001g0004	2	HG02572.hp1 HG02717.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.113-2131delC c.113-2131delC	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154260576
chrX:154260986	T T	C C	2	a0003c0001t0001g0001 a0003c0001t0001g0004 a0003c0001t0001g0001 a0003c0001t0001g0004	2	HG02572.hp1 HG02717.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.113-1726T>C c.113-1726T>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154260986
chrX:154261141	T T	C C	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.113-1571T>C c.113-1571T>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154261141
chrX:154261388	C C	T T	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.113-1324C>T c.113-1324C>T	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154261388
chrX:154261532	G G	C C	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.113-1180G>C c.113-1180G>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154261532
chrX:154261533	C C	G G	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.113-1179C>G c.113-1179C>G	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154261533
chrX:154261585	CA CA	C C	3	a0002c0004t0001g0006 a0003c0001t0001g0004 a0004c0005t0002g0003 a0002c0004t0001g0006 a0003c0001t0001g0004 a0004c0005t0002g0003	3	HG00642.hp1 HG02145.hp1 HG02572.hp1 HG00642.hp1 HG02145.hp1 HG02572.hp1	intron_variant	MODIFIER	c.113-1111delA c.113-1111delA	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	154261585
chrX:154261669	G G	T T	5	a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 others(2): Show a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	5	HG00642.hp1 HG02145.hp1 HG02486.hp1 others(2): Show HG00642.hp1 HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.113-1043G>T c.113-1043G>T	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154261669
chrX:154261838	A A	C C	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.113-874A>C c.113-874A>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154261838
chrX:154262284	G G	A A	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.113-428G>A c.113-428G>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154262284
chrX:154262480	T T	C C	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.113-232T>C c.113-232T>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154262480
chrX:154262621	G G	A A	2	a0002c0004t0001g0006 a0003c0001t0001g0004 a0002c0004t0001g0006 a0003c0001t0001g0004	2	HG00642.hp1 HG02572.hp1 HG00642.hp1 HG02572.hp1	intron_variant	MODIFIER	c.113-91G>A c.113-91G>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154262621
chrX:154262688	C C	T T	1	a0001c0006t0001g0007 a0001c0006t0001g0007	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.113-24C>T c.113-24C>T	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	1/5		chrX	154262688
chrX:154263402	T T	C C	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.409+394T>C c.409+394T>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154263402
chrX:154263911	G G	C C	1	a0002c0004t0001g0006 a0002c0004t0001g0006	1	HG00642.hp1 HG00642.hp1	intron_variant	MODIFIER	c.409+903G>C c.409+903G>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154263911
chrX:154263940	A A	C C	2	a0003c0001t0001g0001 a0003c0001t0001g0004 a0003c0001t0001g0001 a0003c0001t0001g0004	2	HG02572.hp1 HG02717.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.409+932A>C c.409+932A>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154263940
chrX:154263957	A A	G G	1	a0004c0005t0002g0003 a0004c0005t0002g0003	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.409+949A>G c.409+949A>G	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154263957
chrX:154264656	G G	A A	5	a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 others(2): Show a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	5	HG00642.hp1 HG02145.hp1 HG02486.hp1 others(2): Show HG00642.hp1 HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.410-340G>A c.410-340G>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154264656
chrX:154264668	C C	G G	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.410-328C>G c.410-328C>G	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154264668
chrX:154264669	G G	C C	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.410-327G>C c.410-327G>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154264669
chrX:154264735	C C	G G	5	a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 others(2): Show a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	5	HG00642.hp1 HG02145.hp1 HG02486.hp1 others(2): Show HG00642.hp1 HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.410-261C>G c.410-261C>G	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154264735
chrX:154264825	T T	G G	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.410-171T>G c.410-171T>G	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154264825
chrX:154264828	C C	A A	2	a0003c0001t0001g0001 a0003c0001t0001g0004 a0003c0001t0001g0001 a0003c0001t0001g0004	2	HG02572.hp1 HG02717.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.410-168C>A c.410-168C>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5		chrX	154264828
chrX:154264987	T T	TC TC	2	a0003c0001t0001g0004 a0004c0005t0002g0003 a0003c0001t0001g0004 a0004c0005t0002g0003	2	HG02145.hp1 HG02572.hp1 HG02145.hp1 HG02572.hp1	splice_region_variant&intron_variant	LOW	c.410-5dupC c.410-5dupC	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	154264987
chrX:154265550	G G	C C	4	a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 others(1): Show a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	4	HG00642.hp1 HG02145.hp1 HG02572.hp1 others(1): Show HG00642.hp1 HG02145.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.578+386G>C c.578+386G>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/5		chrX	154265550
chrX:154265562	G G	A A	2	a0003c0001t0001g0001 a0003c0001t0001g0004 a0003c0001t0001g0001 a0003c0001t0001g0004	2	HG02572.hp1 HG02717.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.578+398G>A c.578+398G>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/5		chrX	154265562
chrX:154265951	T T	TGAAAATG others(334): Show TGAAAATGTCCTGGAAGCAGGGCCGGGCGCGGTGGCTCACGCCTGTAATC CCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGA GACCATCCTGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAA AATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGG CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCC GAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0003c0001t0001g0001 a0003c0001t0001g0001	1	HG02717.hp1 HG02717.hp1	intron_variant	MODIFIER	c.579-662_579-661ins others(341): Show c.579-662_579-661insGGCCGGGCGCGGTGGCTCACGCCTGTAATC CCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGA GACCATCCTGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAA AATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGG CTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCC GAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATGT CCTGGAAGCAG	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	154265951
chrX:154266166	G G	A A	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.579-466G>A c.579-466G>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/5		chrX	154266166
chrX:154266220	CTA CTA	C C	4	a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 others(1): Show a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	4	HG00642.hp1 HG02145.hp1 HG02572.hp1 others(1): Show HG00642.hp1 HG02145.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.579-410_579-409del others(2): Show c.579-410_579-409delAT	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	154266220
chrX:154266227	A A	T T	4	a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 others(1): Show a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	4	HG00642.hp1 HG02145.hp1 HG02572.hp1 others(1): Show HG00642.hp1 HG02145.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.579-405A>T c.579-405A>T	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/5		chrX	154266227
chrX:154266342	G G	T T	3	a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	3	HG02145.hp1 HG02572.hp1 HG02717.hp1 HG02145.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.579-290G>T c.579-290G>T	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/5		chrX	154266342
chrX:154266405	A A	G G	1	a0004c0005t0002g0003 a0004c0005t0002g0003	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.579-227A>G c.579-227A>G	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/5		chrX	154266405
chrX:154266407	C C	A A	1	a0004c0005t0002g0003 a0004c0005t0002g0003	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.579-225C>A c.579-225C>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	3/5		chrX	154266407
chrX:154266885	A A	G G	1	a0002c0004t0001g0006 a0002c0004t0001g0006	1	HG00642.hp1 HG00642.hp1	intron_variant	MODIFIER	c.744+88A>G c.744+88A>G	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	4/5		chrX	154266885
chrX:154266892	C C	A A	1	a0004c0005t0002g0003 a0004c0005t0002g0003	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.744+95C>A c.744+95C>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	4/5		chrX	154266892
chrX:154267071	G G	C C	3	a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	3	HG02145.hp1 HG02572.hp1 HG02717.hp1 HG02145.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.744+274G>C c.744+274G>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	4/5		chrX	154267071
chrX:154268089	A A	G G	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.745-263A>G c.745-263A>G	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	4/5		chrX	154268089
chrX:154268650	C C	T T	3	a0002c0003t0001g0002 a0003c0001t0001g0001 a0003c0001t0001g0004 a0002c0003t0001g0002 a0003c0001t0001g0001 a0003c0001t0001g0004	3	HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.984+59C>T c.984+59C>T	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	5/5		chrX	154268650
chrX:154268860	C C	T T	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.984+269C>T c.984+269C>T	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	5/5		chrX	154268860
chrX:154269115	T T	C C	6	a0001c0002t0001g0005 a0002c0003t0001g0002 a0002c0004t0001g0006 others(3): Show a0001c0002t0001g0005 a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	6	HG00642.hp1 HG02145.hp1 HG02486.hp1 others(3): Show HG00642.hp1 HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 NA18970.hp1	intron_variant	MODIFIER	c.984+524T>C c.984+524T>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	5/5		chrX	154269115
chrX:154269460	T T	C C	6	a0001c0002t0001g0005 a0002c0003t0001g0002 a0002c0004t0001g0006 others(3): Show a0001c0002t0001g0005 a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	6	HG00642.hp1 HG02145.hp1 HG02486.hp1 others(3): Show HG00642.hp1 HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 NA18970.hp1	intron_variant	MODIFIER	c.984+869T>C c.984+869T>C	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	5/5		chrX	154269460
chrX:154270052	G G	T T	6	a0001c0002t0001g0005 a0002c0003t0001g0002 a0002c0004t0001g0006 others(3): Show a0001c0002t0001g0005 a0002c0003t0001g0002 a0002c0004t0001g0006 a0003c0001t0001g0001 a0003c0001t0001g0004 a0004c0005t0002g0003	6	HG00642.hp1 HG02145.hp1 HG02486.hp1 others(3): Show HG00642.hp1 HG02145.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 NA18970.hp1	intron_variant	MODIFIER	c.985-822G>T c.985-822G>T	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	5/5		chrX	154270052
chrX:154270460	G G	A A	3	a0002c0003t0001g0002 a0003c0001t0001g0001 a0003c0001t0001g0004 a0002c0003t0001g0002 a0003c0001t0001g0001 a0003c0001t0001g0004	3	HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1	intron_variant	MODIFIER	c.985-414G>A c.985-414G>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	5/5		chrX	154270460
chrX:154270730	C C	A A	1	a0002c0003t0001g0002 a0002c0003t0001g0002	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.985-144C>A c.985-144C>A	OPN1MW3	ENSG00000269433.4	transcript	ENST00000599405.4	protein_coding	5/5		chrX	154270730

Search by Genic region

Search

JoGo Haplotype Explorer

OPN1MW3_chrX_154252582_154276090 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 4)

Coding Level Haplotype Info (Total: 6)

Transcript Level Haplotype Info (Total: 6)

Genebody Level Haplotype Info (Total: 7)

Haplotype Details by Sample (Haploid Level) (Total: 7)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 2)

Transcript Level Haplotype Variants (Exon) (Total: 1)

Genebody Level Haplotype Variants (Intron) (Total: 49)

Annotation (Repeats)

Annotation (SNP Array)