JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR4F3_chr5_181362268_181373262	0/0	a0007	312	1	1	0	0	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F5_chr1_60419_76585	0/0	a0001	326	105	8	12	76	1	8	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0002	273	41	1	5	35	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0003	326	25	5	3	8	3	6	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0004	326	19	11	5	0	1	2	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	1/0	a0005	326	15	12	1	0	1	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0006	326	3	0	1	0	0	2	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0007	326	2	0	0	2	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0008	326	1	1	0	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0009	326	1	0	1	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0010	239	1	0	1	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0011	273	1	0	0	1	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	a0012	326	1	0	1	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F6_chr15_101798509_101811887	1/0	a0001	312	354	91	78	128	16	40	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	a0002	312	8	0	0	8	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	a0003	312	3	0	1	0	2	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	a0004	312	2	2	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/1	a0005	312	1	0	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	a0006	312	1	1	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	a0007	312	1	0	0	1	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	a0008	312	1	0	0	1	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	a0009	312	1	0	1	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4K13_chr14_20024399_20041038	1/1	a0001	304	405	84	61	205	13	40	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0002	304	34	5	15	5	1	8	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0003	304	5	5	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0004	304	5	0	0	5	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0005	304	5	5	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0006	94	3	0	0	3	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0007	304	2	0	0	2	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0008	304	1	0	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0009	304	1	0	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0010	304	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0011	304	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0012	304	1	0	0	0	0	1	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0013	304	1	0	0	0	0	1	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	a0014	304	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K14_chr14_20009143_20024307	1/1	a0001	310	347	56	66	169	13	41	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	a0002	310	47	4	6	31	1	5	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	a0003	310	29	26	3	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	a0004	310	8	8	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	a0005	310	3	3	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	a0006	195	1	0	0	1	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	a0007	310	1	0	1	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	a0008	310	1	0	0	1	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	a0009	310	1	1	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K15_chr14_19970591_19981565	1/1	a0001	324	309	26	63	177	11	30	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	a0002	324	71	55	6	6	0	4	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	a0003	324	64	14	11	26	5	8	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	a0004	324	4	0	0	4	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	a0005	324	3	0	1	0	0	2	copy fasta	OR4K15	chr14	19970591	19981565