Joint Open Genome and Omics Platform (JoGo)

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geneid	26683
ensemblid	ENSG00000230178.1
hgncid	8300
symbol	OR4F3
name	olfactory receptor family 4 subfamily F member 3
refseq_nuc	NM_001408386.1
refseq_prot	NP_001395315.1
ensembl_nuc	ENST00000456475.1
ensembl_prot	ENSP00000394282.1
mane_status	MANE Select
chr	chr5
start	181367268
end	181368262
strand	+
ver	v1.2
region	chr5:181367268-181368262
region5000	chr5:181362268-181373262
regionname0	OR4F3_chr5_181367268_181368262
regionname5000	OR4F3_chr5_181362268_181373262

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/1	312	117	9	29	62	4	12	41	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0002	0/0	10	5	2	0	3	0	0	2	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0003	0/0	312	5	0	0	5	0	0	5	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0004	0/0	312	1	0	0	1	0	0	1	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0005	0/0	312	1	0	0	1	0	0	1	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0006	0/0	312	1	0	1	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0007	0/0	312	1	1	0	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/1	939	117	9	29	62	4	12	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
c0002	0/0	939	5	0	0	5	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
c0003	0/0	940	3	0	0	3	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
c0004	0/0	940	2	2	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
c0005	0/0	939	1	0	0	1	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
c0006	0/0	939	1	1	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
c0007	0/0	939	1	0	1	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
c0008	0/0	939	1	0	0	1	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/1	57	124	10	30	67	4	12	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
t0002	0/0	57	7	2	0	5	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	0/1	131	12	30	72	4	12	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/1	939	117	9	29	62	4	12	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0002c0003	0/0	940	3	0	0	3	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0002c0004	0/0	940	2	2	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0003c0002	0/0	939	5	0	0	5	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0004c0008	0/0	939	1	0	0	1	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0005c0005	0/0	939	1	0	0	1	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0006c0007	0/0	939	1	0	1	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0007c0006	0/0	939	1	1	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/1	995	117	9	29	62	4	12	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0002c0003t0002	0/0	996	3	0	0	3	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0002c0004t0002	0/0	996	2	2	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0003c0002t0001	0/0	995	5	0	0	5	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0004c0008t0002	0/0	995	1	0	0	1	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0005c0005t0002	0/0	995	1	0	0	1	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0006c0007t0001	0/0	995	1	0	1	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262
a0007c0006t0001	0/0	995	1	1	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	copy fasta	chr5	181362268	181373262

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0000	0/1	117	9	29	62	4	12	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
a0002c0003t0002g0000	0/0	3	0	0	3	0	0	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
a0002c0004t0002g0000	0/0	2	2	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
a0003c0002t0001g0000	0/0	5	0	0	5	0	0	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
a0004c0008t0002g0000	0/0	1	0	0	1	0	0	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
a0005c0005t0002g0000	0/0	1	0	0	1	0	0	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
a0006c0007t0001g0000	0/0	1	0	1	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
a0007c0006t0001g0000	0/0	1	1	0	0	0	0	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0000	EUR	GBR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG00140	hp2	a0001	c0001	t0001	g0000	EUR	GBR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG00597	hp1	a0001	c0001	t0001	g0000	EAS	CHS	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG00597	hp2	a0001	c0001	t0001	g0000	EAS	CHS	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG00609	hp1	a0001	c0001	t0001	g0000	EAS	CHS	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG00609	hp2	a0001	c0001	t0001	g0000	EAS	CHS	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG00642	hp1	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG00642	hp2	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG00673	hp1	a0001	c0001	t0001	g0000	EAS	CHS	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG00673	hp2	a0001	c0001	t0001	g0000	EAS	CHS	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01069	hp1	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01069	hp2	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01071	hp1	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01071	hp2	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01081	hp1	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01081	hp2	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01099	hp1	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01099	hp2	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01175	hp1	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01175	hp2	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01192	hp1	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01192	hp2	a0001	c0001	t0001	g0000	AMR	PUR	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01346	hp1	a0001	c0001	t0001	g0000	AMR	CLM	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01346	hp2	a0001	c0001	t0001	g0000	AMR	CLM	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01358	hp1	a0001	c0001	t0001	g0000	AMR	CLM	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01358	hp2	a0001	c0001	t0001	g0000	AMR	CLM	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01433	hp1	a0001	c0001	t0001	g0000	AMR	CLM	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01433	hp2	a0001	c0001	t0001	g0000	AMR	CLM	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01943	hp1	a0001	c0001	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01943	hp2	a0001	c0001	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01975	hp1	a0001	c0001	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01975	hp2	a0001	c0001	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01981	hp1	a0001	c0001	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG01981	hp2	a0001	c0001	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02027	hp1	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02027	hp2	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02040	hp1	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02040	hp2	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02071	hp1	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02071	hp2	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02074	hp1	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02074	hp2	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02132	hp1	a0002	c0003	t0002	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02132	hp2	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02145	hp1	a0001	c0001	t0001	g0000	AFR	ACB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02145	hp2	a0001	c0001	t0001	g0000	AFR	ACB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02148	hp1	a0006	c0007	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02148	hp2	a0001	c0001	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02155	hp1	a0001	c0001	t0001	g0000	EAS	CDX	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02155	hp2	a0001	c0001	t0001	g0000	EAS	CDX	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02258	hp1	a0002	c0004	t0002	g0000	AFR	ACB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02258	hp2	a0001	c0001	t0001	g0000	AFR	ACB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02300	hp1	a0001	c0001	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02300	hp2	a0001	c0001	t0001	g0000	AMR	PEL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02523	hp1	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02523	hp2	a0001	c0001	t0001	g0000	EAS	KHV	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02602	hp1	a0001	c0001	t0001	g0000	SAS	PJL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02602	hp2	a0001	c0001	t0001	g0000	SAS	PJL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02615	hp1	a0001	c0001	t0001	g0000	AFR	GWD	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG02615	hp2	a0002	c0004	t0002	g0000	AFR	GWD	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG03017	hp1	a0001	c0001	t0001	g0000	SAS	PJL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG03017	hp2	a0001	c0001	t0001	g0000	SAS	PJL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG03492	hp1	a0001	c0001	t0001	g0000	SAS	PJL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG03492	hp2	a0001	c0001	t0001	g0000	SAS	PJL	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG03927	hp1	a0001	c0001	t0001	g0000	SAS	BEB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG03927	hp2	a0001	c0001	t0001	g0000	SAS	BEB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG03942	hp1	a0001	c0001	t0001	g0000	SAS	BEB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG03942	hp2	a0001	c0001	t0001	g0000	SAS	BEB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG04115	hp1	a0001	c0001	t0001	g0000	SAS	STU	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG04115	hp2	a0001	c0001	t0001	g0000	SAS	STU	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18747	hp1	a0001	c0001	t0001	g0000	EAS	CHB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18747	hp2	a0001	c0001	t0001	g0000	EAS	CHB	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18941	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18941	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18956	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18956	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18965	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18965	hp2	a0003	c0002	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18966	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18966	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18967	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18967	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18970	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18970	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18972	hp1	a0005	c0005	t0002	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18972	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18975	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18975	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18980	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18980	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18984	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18984	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18994	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18994	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18999	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA18999	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19009	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19009	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19054	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19054	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19057	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19057	hp2	a0003	c0002	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19064	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19064	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19066	hp1	a0002	c0003	t0002	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19066	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19067	hp1	a0003	c0002	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19067	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19070	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19070	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19078	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19078	hp2	a0002	c0003	t0002	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19081	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19081	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19082	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19082	hp2	a0003	c0002	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19084	hp1	a0004	c0008	t0002	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19084	hp2	a0003	c0002	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19087	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19087	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19090	hp1	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA19090	hp2	a0001	c0001	t0001	g0000	EAS	JPT	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA20129	hp1	a0001	c0001	t0001	g0000	AFR	ASW	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA20129	hp2	a0001	c0001	t0001	g0000	AFR	ASW	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA20805	hp1	a0001	c0001	t0001	g0000	EUR	TSI	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA20805	hp2	a0001	c0001	t0001	g0000	EUR	TSI	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG06807	hp1	a0001	c0001	t0001	g0000	AFR	USA	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
HG06807	hp2	a0007	c0006	t0001	g0000	AFR	USA	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA20300	hp1	a0001	c0001	t0001	g0000	AFR	USA	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
NA20300	hp2	a0001	c0001	t0001	g0000	AFR	USA	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0000	REF	REF	OR4F3_chr5_181362268_181373262	OR4F3	chr5	181362268	181373262

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chr5:181367314	T T	TC TC	1	a0002 a0002	5	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(2): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA19066.hp1 NA19078.hp2	frameshift_variant	HIGH	c.29dupC c.29dupC	p.Glu11fs p.Glu11fs	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	49/995	30/939	10/312	INFO_REALIGN_3_PRIME	chr5	181367314
chr5:181367458	C C	G G	1	a0002 a0002	3	HG02132.hp1 NA19066.hp1 NA19078.hp2 HG02132.hp1 NA19066.hp1 NA19078.hp2	missense_variant	MODERATE	c.172C>G c.172C>G	p.Pro58Ala p.Pro58Ala	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	191/995	172/939	58/312		chr5	181367458
chr5:181367528	T T	C C	1	a0002 a0002	5	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(2): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA19066.hp1 NA19078.hp2	missense_variant	MODERATE	c.242T>C c.242T>C	p.Met81Thr p.Met81Thr	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	261/995	242/939	81/312		chr5	181367528
chr5:181367551	C C	T T	1	a0004 a0004	1	NA19084.hp1 NA19084.hp1	missense_variant	MODERATE	c.265C>T c.265C>T	p.Arg89Cys p.Arg89Cys	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	284/995	265/939	89/312		chr5	181367551
chr5:181367605	G G	A A	2	a0002 a0005 a0002 a0005	6	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(3): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA18972.hp1 NA19066.hp1 NA19078.hp2	missense_variant	MODERATE	c.319G>A c.319G>A	p.Val107Ile p.Val107Ile	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	338/995	319/939	107/312		chr5	181367605
chr5:181367652	A A	T T	1	a0005 a0005	1	NA18972.hp1 NA18972.hp1	missense_variant	MODERATE	c.366A>T c.366A>T	p.Arg122Ser p.Arg122Ser	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	385/995	366/939	122/312		chr5	181367652
chr5:181367675	T T	G G	1	a0004 a0004	1	NA19084.hp1 NA19084.hp1	missense_variant	MODERATE	c.389T>G c.389T>G	p.Leu130Arg p.Leu130Arg	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	408/995	389/939	130/312		chr5	181367675
chr5:181367785	G G	C C	3	a0002 a0004 a0005 a0002 a0004 a0005	7	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(4): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA18972.hp1 NA19066.hp1 NA19078.hp2 NA19084.hp1	missense_variant	MODERATE	c.499G>C c.499G>C	p.Ala167Pro p.Ala167Pro	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	518/995	499/939	167/312		chr5	181367785
chr5:181367834	G G	A A	1	a0005 a0005	1	NA18972.hp1 NA18972.hp1	missense_variant	MODERATE	c.548G>A c.548G>A	p.Arg183Gln p.Arg183Gln	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	567/995	548/939	183/312		chr5	181367834
chr5:181367857	G G	A A	1	a0007 a0007	1	HG06807.hp2 HG06807.hp2	missense_variant	MODERATE	c.571G>A c.571G>A	p.Asp191Asn p.Asp191Asn	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	590/995	571/939	191/312		chr5	181367857
chr5:181367878	A A	G G	1	a0006 a0006	1	HG02148.hp1 HG02148.hp1	missense_variant	MODERATE	c.592A>G c.592A>G	p.Met198Val p.Met198Val	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	611/995	592/939	198/312		chr5	181367878
chr5:181367884	A A	C C	1	a0005 a0005	1	NA18972.hp1 NA18972.hp1	missense_variant	MODERATE	c.598A>C c.598A>C	p.Thr200Pro p.Thr200Pro	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	617/995	598/939	200/312		chr5	181367884
chr5:181367941	G G	A A	3	a0002 a0004 a0005 a0002 a0004 a0005	7	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(4): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA18972.hp1 NA19066.hp1 NA19078.hp2 NA19084.hp1	missense_variant	MODERATE	c.655G>A c.655G>A	p.Val219Ile p.Val219Ile	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	674/995	655/939	219/312		chr5	181367941
chr5:181368023	T T	C C	4	a0002 a0003 a0004 others(1): Show a0002 a0003 a0004 a0005	12	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(9): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA18965.hp2 NA18972.hp1 NA19057.hp2 NA19066.hp1 NA19067.hp1 NA19078.hp2 NA19082.hp2 NA19084.hp1 NA19084.hp2	missense_variant	MODERATE	c.737T>C c.737T>C	p.Val246Ala p.Val246Ala	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	756/995	737/939	246/312		chr5	181368023
chr5:181368064	C C	T T	3	a0002 a0004 a0005 a0002 a0004 a0005	7	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(4): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA18972.hp1 NA19066.hp1 NA19078.hp2 NA19084.hp1	missense_variant	MODERATE	c.778C>T c.778C>T	p.Arg260Trp p.Arg260Trp	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	797/995	778/939	260/312		chr5	181368064
chr5:181368065	G G	A A	1	a0002 a0002	3	HG02132.hp1 NA19066.hp1 NA19078.hp2 HG02132.hp1 NA19066.hp1 NA19078.hp2	missense_variant	MODERATE	c.779G>A c.779G>A	p.Arg260Gln p.Arg260Gln	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	798/995	779/939	260/312		chr5	181368065
chr5:181368215	G G	A A	3	a0002 a0004 a0005 a0002 a0004 a0005	7	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(4): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA18972.hp1 NA19066.hp1 NA19078.hp2 NA19084.hp1	missense_variant	MODERATE	c.929G>A c.929G>A	p.Arg310Lys p.Arg310Lys	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	948/995	929/939	310/312		chr5	181368215

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr5:181367856	C C	T T	2	a0002c0003 a0002c0004 a0002c0003 a0002c0004	5	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(2): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA19066.hp1 NA19078.hp2	synonymous_variant	LOW	c.570C>T c.570C>T	p.Thr190Thr p.Thr190Thr	OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1	589/995	570/939	190/312			chr5	181367856

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr5:181368232	T T	C C	4	a0002c0003t0002 a0002c0004t0002 a0004c0008t0002 others(1): Show a0002c0003t0002 a0002c0004t0002 a0004c0008t0002 a0005c0005t0002	7	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(4): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA18972.hp1 NA19066.hp1 NA19078.hp2 NA19084.hp1	3_prime_UTR_variant	MODIFIER	c.7T>C c.7T>C		OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1				7		chr5	181368232
chr5:181368247	A A	G G	4	a0002c0003t0002 a0002c0004t0002 a0004c0008t0002 others(1): Show a0002c0003t0002 a0002c0004t0002 a0004c0008t0002 a0005c0005t0002	7	HG02132.hp1 HG02258.hp1 HG02615.hp2 others(4): Show HG02132.hp1 HG02258.hp1 HG02615.hp2 NA18972.hp1 NA19066.hp1 NA19078.hp2 NA19084.hp1	3_prime_UTR_variant	MODIFIER	c.22A>G c.22A>G		OR4F3	ENSG00000230178.1	transcript	ENST00000456475.1	protein_coding	1/1				22		chr5	181368247

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 7)

CCoding Level Haplotype Info (Total: 8)

TTranscript Level Haplotype Info (Total: 2)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 8)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 8)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 8)

Haplotype Details by Sample (Haploid Level) (Total: 131)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 17)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 2)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

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Annotation (Repeats)

Annotation (SNP Array)