JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR6P1_chr1_158555606_158575580	0/0	a0003	317	5	0	2	0	3	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	a0004	317	5	5	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	a0005	317	4	4	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	a0006	317	4	4	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	a0007	317	2	0	0	2	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	a0008	317	2	2	0	0	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	a0009	317	1	0	0	1	0	0	copy fasta	OR6P1	chr1	158555606	158575580
OR6P1_chr1_158555606_158575580	0/0	a0010	317	1	0	0	0	0	1	copy fasta	OR6P1	chr1	158555606	158575580
OR6Q1_chr11_58025953_58036906	0/1	a0001	317	165	24	23	96	5	16	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0002	317	141	31	23	72	4	11	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	1/0	a0003	317	61	19	20	12	2	7	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0004	248	28	10	6	6	3	3	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0005	317	9	0	0	9	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0006	317	4	0	0	4	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0007	317	3	3	0	0	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0008	317	1	0	1	0	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0009	317	1	0	0	1	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0010	317	1	0	1	0	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0011	317	1	0	0	0	0	1	copy fasta	OR6Q1	chr11	58025953	58036906
OR6Q1_chr11_58025953_58036906	0/0	a0012	317	1	1	0	0	0	0	copy fasta	OR6Q1	chr11	58025953	58036906
OR6S1_chr14_20635696_20646691	0/0	a0001	331	231	30	30	139	7	25	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/1	a0002	331	192	47	45	75	7	17	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0003	331	14	12	2	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0004	331	11	0	0	11	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	1/0	a0005	331	4	3	0	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0006	331	3	0	1	0	2	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0007	331	3	2	1	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0008	331	3	2	1	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0009	331	2	0	0	0	0	2	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0010	331	2	0	0	0	0	2	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0011	331	2	0	2	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0012	331	1	1	0	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0013	331	1	1	0	0	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6S1_chr14_20635696_20646691	0/0	a0014	331	1	0	0	1	0	0	copy fasta	OR6S1	chr14	20635696	20646691
OR6T1_chr11_123937867_123948838	1/1	a0001	323	383	82	61	181	15	42	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0002	323	39	7	8	24	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0003	323	7	0	0	7	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0004	323	2	2	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0005	323	2	0	0	0	1	1	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0006	323	2	2	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0007	323	2	2	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0008	323	2	0	1	0	0	1	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0009	323	1	0	1	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0010	323	1	1	0	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6T1_chr11_123937867_123948838	0/0	a0011	323	1	0	1	0	0	0	copy fasta	OR6T1	chr11	123937867	123948838
OR6V1_chr7_143047341_143058282	0/1	a0001	313	299	46	68	131	13	40	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	a0002	313	24	11	4	8	0	1	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	a0003	313	12	9	1	0	1	1	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	a0004	313	11	11	0	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	a0005	18	10	10	0	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282