JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR6V1_chr7_143047341_143058282	0/0	a0006	313	7	6	1	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	a0007	313	1	0	0	1	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	a0008	313	1	0	0	1	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	a0009	312	1	1	0	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	a0010	313	1	0	0	1	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6X1_chr11_123748580_123759518	1/1	a0001	312	396	82	67	195	10	40	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	a0002	312	29	3	12	6	4	4	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	a0003	312	3	0	0	3	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	a0004	312	3	3	0	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	a0005	312	3	3	0	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	a0006	312	2	1	1	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	a0007	312	1	1	0	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6Y1_chr1_158539550_158559405	0/0	a0000	0	6	6	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	1/1	a0001	325	287	54	54	133	12	32	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	a0002	325	106	9	20	65	4	8	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	a0003	325	11	11	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	a0004	325	8	8	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	a0005	325	5	5	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	a0006	325	5	5	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	a0007	325	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	a0008	325	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR7A10_chr19_14835466_14853922	1/1	a0001	309	404	56	74	220	11	41	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	a0002	309	47	13	6	17	3	8	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	a0003	309	21	15	2	4	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	a0004	309	11	11	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	a0005	309	1	0	0	0	0	1	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	a0006	309	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	a0007	309	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	a0008	309	1	1	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	a0009	309	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A17_chr19_14873203_14891132	1/1	a0001	309	271	72	53	104	13	27	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	a0002	309	145	8	25	98	3	11	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	a0003	309	22	13	3	4	0	2	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	a0004	309	3	3	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	a0005	309	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	a0006	309	1	1	0	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A17_chr19_14873203_14891132	0/0	a0007	309	1	0	1	0	0	0	copy fasta	OR7A17	chr19	14873203	14891132
OR7A5_chr19_14821241_14840185	1/1	a0001	319	454	88	81	221	16	46	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	a0002	319	6	6	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	a0003	319	6	6	0	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	a0004	319	2	0	0	0	0	2	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	a0005	258	1	0	0	0	0	1	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	a0006	319	1	0	0	1	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	a0007	319	1	0	0	0	0	1	copy fasta	OR7A5	chr19	14821241	14840185
OR7A5_chr19_14821241_14840185	0/0	a0008	319	1	0	1	0	0	0	copy fasta	OR7A5	chr19	14821241	14840185
OR7C1_chr19_14793515_14840185	0/0	a0001	320	251	36	41	144	6	24	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/1	a0002	320	53	9	9	26	3	5	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	0/0	a0003	320	50	19	18	4	2	7	copy fasta	OR7C1	chr19	14793515	14840185
OR7C1_chr19_14793515_14840185	1/0	a0004	320	13	0	6	0	4	2	copy fasta	OR7C1	chr19	14793515	14840185