JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OSR1_chr2_19346485_19363623	1/1	a0001	266	422	100	76	182	16	46	copy fasta	OSR1	chr2	19346485	19363623
OSR2_chr8_98939442_98957100	1/1	a0001	312	298	66	50	138	18	24	copy fasta	OSR2	chr8	98939442	98957100
OST4_chr2_27065472_27076654	1/1	a0001	37	338	92	68	124	18	34	copy fasta	OST4	chr2	27065472	27076654
OSTC_chr4_108645599_108672820	1/1	a0001	149	372	96	70	152	16	36	copy fasta	OSTC	chr4	108645599	108672820
OSTF1_chr9_75083514_75152265	1/1	a0001	214	365	80	74	151	14	44	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	a0002	214	1	0	0	1	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTM1_chr6_108036409_108079741	1/1	a0001	334	362	80	56	177	13	34	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	a0002	334	11	11	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	a0003	150	10	0	4	5	1	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	a0004	334	4	4	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	a0005	334	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTN_chr3_191194241_191270615	0/0	a0000	0	1	0	1	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	1/1	a0001	133	398	85	77	171	16	47	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	a0002	133	1	0	0	0	0	1	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	a0003	133	1	0	0	1	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	a0004	133	1	1	0	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OTC_chrX_38347604_38426446	1/1	a0001	354	265	45	41	134	11	32	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	a0002	354	40	31	8	0	1	0	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	a0003	354	1	0	0	1	0	0	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	a0004	354	1	0	0	0	1	0	copy fasta	OTC	chrX	38347604	38426446
OTC_chrX_38347604_38426446	0/0	a0005	354	1	0	1	0	0	0	copy fasta	OTC	chrX	38347604	38426446
OTOA_chr16_21658968_21765729	1/1	a0001	1139	263	65	53	103	14	26	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	a0002	1139	49	11	9	25	0	4	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	a0003	268	1	0	1	0	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	a0004	1139	1	0	0	0	0	1	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	a0005	1139	1	0	0	1	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	a0006	1139	1	0	0	0	0	1	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	a0007	1139	1	0	1	0	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	a0008	1139	1	0	0	1	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	a0009	1139	1	0	0	1	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOA_chr16_21658968_21765729	0/0	a0010	1139	1	0	0	1	0	0	copy fasta	OTOA	chr16	21658968	21765729
OTOF_chr2_26452203_26483124	1/0	a0001	1230	255	35	61	108	16	34	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0002	1230	40	35	5	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0003	1230	10	10	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0004	1230	5	4	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0005	1230	2	0	2	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/1	a0006	1230	2	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0007	1230	2	2	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0008	1230	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0009	1234	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0010	1230	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0011	1230	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0012	1230	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0013	1230	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0014	1230	1	0	1	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0015	1230	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0016	1230	1	0	0	0	1	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0017	1230	1	0	0	0	1	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0018	1230	1	1	0	0	0	0	copy fasta	OTOF	chr2	26452203	26483124
OTOF_chr2_26452203_26483124	0/0	a0019	1230	1	0	0	1	0	0	copy fasta	OTOF	chr2	26452203	26483124