JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OTOP3_chr17_74930898_74954992	0/0	a0010	578	2	2	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0011	578	2	0	0	2	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0012	578	2	0	0	0	0	2	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0013	578	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0014	585	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0015	553	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0016	578	1	1	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0017	578	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0018	578	1	0	0	0	1	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0019	578	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0020	578	1	1	0	0	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0021	578	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0022	578	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOP3_chr17_74930898_74954992	0/0	a0023	578	1	0	0	1	0	0	copy fasta	OTOP3	chr17	74930898	74954992
OTOR_chr20_16743358_16757164	1/1	a0001	128	364	94	68	162	9	29	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	a0002	128	109	6	9	76	2	16	copy fasta	OTOR	chr20	16743358	16757164
OTOR_chr20_16743358_16757164	0/0	a0003	19	13	0	7	0	5	1	copy fasta	OTOR	chr20	16743358	16757164
OTOS_chr2_240134026_240145658	1/1	a0001	89	435	92	78	198	16	49	copy fasta	OTOS	chr2	240134026	240145658
OTOS_chr2_240134026_240145658	0/0	a0002	89	1	0	0	0	0	1	copy fasta	OTOS	chr2	240134026	240145658
OTP_chr5_77623712_77643713	1/1	a0001	325	440	90	80	204	16	48	copy fasta	OTP	chr5	77623712	77643713
OTUB1_chr11_63981438_64003412	0/0	a0000	0	1	0	0	0	0	1	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	1/1	a0001	271	327	89	61	122	12	41	copy fasta	OTUB1	chr11	63981438	64003412
OTUB1_chr11_63981438_64003412	0/0	a0002	271	2	1	1	0	0	0	copy fasta	OTUB1	chr11	63981438	64003412
OTUB2_chr14_94021340_94053930	0/1	a0001	234	390	94	65	172	18	40	copy fasta	OTUB2	chr14	94021340	94053930
OTUB2_chr14_94021340_94053930	0/0	a0002	234	5	4	1	0	0	0	copy fasta	OTUB2	chr14	94021340	94053930
OTUD1_chr10_23434075_23447377	1/1	a0001	481	423	94	77	196	16	38	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	a0002	481	4	4	0	0	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	a0003	481	3	0	3	0	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	a0004	481	1	0	0	1	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	a0005	481	1	0	0	1	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	a0006	481	1	0	0	0	0	1	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	a0007	481	1	0	0	0	0	1	copy fasta	OTUD1	chr10	23434075	23447377
OTUD3_chr1_19877395_19917945	1/1	a0001	398	343	89	58	149	15	30	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	a0002	398	19	0	10	6	1	2	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	a0003	398	8	0	6	0	0	2	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	a0004	398	1	0	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	a0005	398	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	a0006	398	1	0	0	0	0	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	a0007	398	1	0	0	0	0	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD4_chr4_145128650_145185589	1/1	a0001	1114	337	78	60	146	11	40	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	a0002	1114	3	0	2	0	1	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	a0003	1114	2	1	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	a0004	1114	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	a0005	1114	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	a0006	1114	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	a0007	1114	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD5_chrX_48917024_48962607	1/1	a0001	566	260	70	47	102	9	30	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	a0002	283	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	a0003	358	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	a0004	529	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607