JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PADI6_chr1_17367196_17406699	0/0	a0004	694	2	0	0	0	0	2	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	a0005	694	2	1	1	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	a0006	694	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	a0007	694	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	a0008	694	1	0	0	0	1	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	a0009	694	1	0	1	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PAEP_chr9_135556756_135571955	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	1/1	a0001	180	295	62	68	113	13	37	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	a0002	180	165	36	16	99	3	11	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	a0003	180	2	2	0	0	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	a0004	180	1	0	0	1	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAF1_chr19_39380629_39396106	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	1/0	a0001	531	364	88	74	142	16	43	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	a0002	531	1	0	0	0	0	1	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	a0003	531	1	0	0	1	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/1	a0004	531	1	0	0	0	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAFAH1B1_chr17_2588654_2690615	1/1	a0001	410	280	82	62	88	12	34	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B2_chr11_117139287_117176045	1/1	a0001	229	432	90	78	200	16	46	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B3_chr19_42292035_42307624	1/1	a0001	231	318	88	72	110	10	36	copy fasta	PAFAH1B3	chr19	42292035	42307624
PAFAH2_chr1_25954767_26003063	0/0	a0001	392	304	98	60	103	15	28	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	a0002	392	2	2	0	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	a0003	392	2	0	0	2	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	a0004	392	1	0	0	0	1	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	a0005	392	1	0	0	1	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAG1_chr8_80962810_81117068	1/1	a0001	432	252	89	35	84	6	36	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	a0002	432	2	2	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	a0003	432	1	0	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	a0004	432	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAGE1_chrX_49682447_49700984	1/1	a0001	146	313	68	44	159	9	31	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	a0002	146	5	5	0	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	a0003	146	1	0	0	0	0	1	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	a0004	115	1	1	0	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	a0005	146	1	0	1	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	a0006	146	1	0	1	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE2B_chrX_55070030_55083909	0/0	a0000	0	1	1	0	0	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	1/1	a0001	111	307	67	55	144	11	28	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	a0002	111	10	10	0	0	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	a0003	111	2	0	0	2	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	a0004	111	2	0	2	0	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	a0005	2	1	0	0	1	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	a0006	91	1	0	0	1	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2B_chrX_55070030_55083909	0/0	a0007	111	1	0	0	1	0	0	copy fasta	PAGE2B	chrX	55070030	55083909
PAGE2_chrX_55084018_55097842	0/0	a0001	111	282	48	55	140	9	30	copy fasta	PAGE2	chrX	55084018	55097842
PAGE2_chrX_55084018_55097842	0/0	a0002	111	23	22	1	0	0	0	copy fasta	PAGE2	chrX	55084018	55097842
PAGE2_chrX_55084018_55097842	0/0	a0003	111	10	10	0	0	0	0	copy fasta	PAGE2	chrX	55084018	55097842
PAGE2_chrX_55084018_55097842	0/0	a0004	111	1	0	1	0	0	0	copy fasta	PAGE2	chrX	55084018	55097842
PAGE3_chrX_55253415_55269916	0/0	a0001	113	265	44	52	138	7	24	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	1/1	a0002	113	48	38	4	0	0	4	copy fasta	PAGE3	chrX	55253415	55269916
PAGE3_chrX_55253415_55269916	0/0	a0003	113	20	0	0	20	0	0	copy fasta	PAGE3	chrX	55253415	55269916
PAGE4_chrX_49824303_49839264	1/1	a0001	102	289	74	54	124	9	26	copy fasta	PAGE4	chrX	49824303	49839264