JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PCNX3_chr11_65610776_65642439	0/0	a0011	496	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0012	2034	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0013	2034	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0014	2034	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0015	2034	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0016	2030	1	0	0	0	0	1	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0017	2034	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0018	2034	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0019	2034	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0020	2034	1	0	1	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0021	2034	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	a0022	2034	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX4_chr14_60086923_60153221	0/1	a0001	1172	134	28	25	58	7	15	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0002	1172	65	33	13	9	0	10	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0003	1172	40	2	0	37	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0004	1172	24	0	0	24	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0005	1172	8	0	1	7	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0006	1172	8	0	2	3	1	2	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0007	1173	7	4	1	0	0	2	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0008	1172	4	0	0	4	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0009	1172	2	2	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0010	1172	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0011	724	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0012	1172	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0013	1172	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0014	1172	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0015	1172	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0016	1172	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0017	1172	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0018	1172	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	1/0	a0019	1172	1	0	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0020	1172	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0021	1172	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0022	1172	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0023	1172	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0024	1172	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	a0025	1172	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCOLCE2_chr3_142812874_142894083	1/1	a0001	415	311	83	56	121	12	37	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	a0002	415	18	3	4	10	1	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	a0003	415	10	0	6	0	3	1	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	a0004	415	1	1	0	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	a0005	415	1	0	0	1	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	a0006	415	1	1	0	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE_chr7_100597363_100613175	1/1	a0001	449	321	83	52	123	16	45	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	a0002	449	4	4	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	a0003	449	1	0	1	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	a0004	449	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	a0005	449	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	a0006	449	1	0	1	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	a0007	449	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175