JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDE4D_chr5_58964038_59898726	0/0	a0002	809	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE5A_chr4_119489403_119633804	0/0	a0001	875	256	57	56	119	7	17	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	1/1	a0002	875	61	25	7	15	6	6	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	a0003	875	8	1	2	3	1	1	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	a0004	875	4	4	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	a0005	875	2	2	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	a0006	875	2	1	1	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	a0007	875	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	a0008	875	1	0	0	1	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	a0009	875	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE6A_chr5_149852953_149949793	1/1	a0001	860	292	63	60	114	14	39	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0002	860	16	15	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0003	860	5	5	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0004	860	3	3	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0005	860	2	0	0	2	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0006	860	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0007	860	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0008	860	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0009	860	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0010	860	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0011	860	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0012	860	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0013	860	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0014	860	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	a0015	860	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6B_chr4_620573_675782	0/1	a0001	854	272	75	47	116	8	25	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0002	854	10	8	2	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0003	854	7	0	0	7	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0004	854	3	0	2	0	0	1	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0005	854	2	2	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0006	854	2	2	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0007	854	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0008	854	1	0	0	0	0	1	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0009	854	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0010	854	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0011	854	1	0	0	1	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0012	854	1	0	1	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0013	854	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0014	854	1	0	0	1	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	1/0	a0015	854	1	0	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0016	854	1	0	0	1	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0017	854	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	a0018	854	1	0	0	0	0	1	copy fasta	PDE6B	chr4	620573	675782
PDE6C_chr10_93607537_93671010	1/0	a0001	858	187	41	31	80	6	28	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/1	a0002	858	162	36	31	76	5	13	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0003	858	13	0	0	13	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0004	858	5	5	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0005	858	4	4	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0006	858	4	4	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	a0007	858	2	0	2	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010