JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PDILT_chr16_20354175_20409737	0/0	a0020	584	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0021	584	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	a0022	584	1	0	0	0	1	0	copy fasta	PDILT	chr16	20354175	20409737
PDK1_chr2_172551090_172613669	1/1	a0001	436	336	77	72	138	8	39	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	a0002	436	4	4	0	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	a0003	436	1	0	0	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	a0004	436	1	1	0	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK2_chr17_50090351_50117152	1/1	a0001	407	394	92	74	168	12	46	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	a0002	407	3	0	0	3	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	a0003	407	1	0	0	1	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK3_chrX_24460286_24539422	1/1	a0001	406	257	60	42	118	7	28	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/0	a0002	38	1	0	0	1	0	0	copy fasta	PDK3	chrX	24460286	24539422
PDK4_chr7_95578499_95601516	1/1	a0001	411	377	97	68	148	16	46	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	a0002	411	3	0	3	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	a0003	411	2	0	0	2	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	a0004	411	1	0	1	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	a0005	411	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDLIM1_chr10_95232572_95296003	1/1	a0001	329	275	66	44	115	12	36	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	a0002	329	60	13	20	10	6	11	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	a0003	329	1	0	0	1	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	a0004	329	1	0	0	0	0	1	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	a0005	329	1	1	0	0	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM2_chr8_22575475_22599298	1/1	a0001	352	314	78	50	129	15	40	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0002	329	37	10	14	11	0	2	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0003	352	10	0	0	10	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0004	329	7	0	3	4	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0005	318	3	1	0	2	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0006	352	3	0	3	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0007	352	2	0	1	0	1	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0008	329	1	0	1	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0009	329	1	0	1	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0010	352	1	0	1	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	a0011	329	1	1	0	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM3_chr4_185495660_185540507	1/1	a0001	364	391	82	69	181	13	44	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	a0002	364	12	11	1	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	a0003	364	4	0	0	4	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	a0004	364	3	0	2	0	1	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	a0005	364	1	1	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	a0006	364	1	0	0	1	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM4_chr5_132252696_132278454	1/1	a0001	330	334	87	77	127	13	28	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	a0002	330	74	11	7	51	1	4	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	a0003	330	2	2	0	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM5_chr4_94446942_94673223	0/1	a0001	596	112	50	20	30	2	9	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	a0002	596	39	6	5	20	7	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	a0003	596	39	8	12	9	3	7	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	a0004	596	16	1	0	13	2	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	1/0	a0005	596	4	0	1	0	0	2	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	a0006	596	3	3	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	a0007	596	1	0	0	0	0	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	a0008	596	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223