JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PHF19_chr9_120850651_120882188	1/1	a0001	580	401	93	66	190	14	36	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	a0002	580	3	1	2	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	a0003	580	2	2	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	a0004	580	2	2	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF1_chr6_33406014_33421439	0/0	a0001	567	353	91	68	147	11	36	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	a0002	567	4	4	0	0	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/1	a0003	567	3	1	0	0	1	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	a0004	567	1	0	0	1	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	a0005	372	1	0	0	1	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	a0006	567	1	0	0	1	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF20L1_chr8_132770388_132853807	1/1	a0001	1017	391	86	69	184	14	36	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	a0002	1017	1	0	1	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20_chr20_35767015_35955370	1/1	a0001	1012	166	64	25	46	8	21	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	a0002	1012	37	6	10	14	2	5	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	a0003	1012	1	0	0	1	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	a0004	1012	1	0	0	1	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	a0005	1012	1	0	1	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF21A_chr11_45924319_46126454	1/1	a0001	681	223	83	39	63	9	27	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	a0002	681	56	1	11	41	1	2	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	a0003	681	1	0	0	0	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21B_chr22_44876162_45015005	1/0	a0001	531	269	73	46	106	10	33	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	a0002	531	19	11	4	0	0	4	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	a0003	531	3	0	0	3	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	a0004	531	3	0	0	3	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/1	a0005	531	2	0	0	0	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	a0006	531	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	a0007	531	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	a0008	531	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	a0009	531	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF23_chr17_7230038_7244457	1/1	a0001	403	390	90	70	173	17	38	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	a0002	403	1	0	1	0	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	a0003	403	1	0	1	0	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	a0004	403	1	0	0	0	1	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	a0005	403	1	0	0	1	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF24_chr9_34953285_34987544	1/1	a0001	400	446	93	79	208	16	48	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	a0002	400	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	a0003	400	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	a0004	400	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	a0005	400	1	0	1	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF2_chr9_93571584_93684587	0/1	a0001	1101	212	66	42	85	8	10	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	1/0	a0002	1096	121	9	27	62	6	16	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	a0003	1096	6	0	0	6	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	a0004	1101	5	5	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	a0005	1101	4	3	1	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	a0006	1101	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	a0007	1096	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF3_chr6_63630802_63731011	1/0	a0001	2039	291	61	60	123	13	33	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0002	2039	8	8	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0003	2039	3	3	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	a0004	2039	3	0	0	3	0	0	copy fasta	PHF3	chr6	63630802	63731011