JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PITRM1_chr10_3132728_3177782	0/0	a0016	1037	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0017	1037	1	0	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	a0018	1037	1	0	0	0	0	1	copy fasta	PITRM1	chr10	3132728	3177782
PITX1_chr5_135022734_135039228	1/1	a0001	314	269	80	63	88	9	27	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	a0002	314	135	14	21	84	5	11	copy fasta	PITX1	chr5	135022734	135039228
PITX2_chr4_110612423_110628077	1/1	a0001	324	422	94	72	198	18	38	copy fasta	PITX2	chr4	110612423	110628077
PITX3_chr10_102225189_102246512	1/1	a0001	302	408	95	76	189	14	32	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	a0002	302	1	0	0	1	0	0	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	a0003	302	1	1	0	0	0	0	copy fasta	PITX3	chr10	102225189	102246512
PIWIL1_chr12_130332887_130377637	0/1	a0001	861	372	89	70	168	10	34	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	a0002	861	41	3	1	25	2	10	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	a0003	861	3	3	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	a0004	861	3	0	0	3	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	a0005	861	2	0	0	2	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	a0006	861	1	1	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	a0007	861	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	a0008	501	1	0	0	1	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	a0009	861	1	0	1	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL2_chr8_22270316_22362568	1/0	a0001	973	274	87	60	92	6	28	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	a0002	973	5	0	0	5	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	a0003	973	5	4	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	a0004	973	4	4	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	a0005	973	2	0	0	2	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	a0006	973	1	1	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	a0007	973	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	a0008	973	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	a0009	973	1	0	0	1	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/0	a0010	973	1	0	1	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL2_chr8_22270316_22362568	0/1	a0011	973	1	0	0	0	0	0	copy fasta	PIWIL2	chr8	22270316	22362568
PIWIL3_chr22_24714034_24779720	0/0	a0001	873	168	31	22	81	11	23	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0002	873	79	19	14	33	3	10	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/1	a0003	873	72	14	18	30	2	7	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	1/0	a0004	873	25	0	5	15	0	4	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0005	873	6	6	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0006	873	5	2	3	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0007	873	4	4	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0008	873	4	0	4	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0009	873	3	3	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0010	873	2	2	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0011	873	2	0	0	0	0	2	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0012	873	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0013	873	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0014	873	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0015	873	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0016	873	1	0	0	1	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0017	873	1	0	0	1	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0018	873	1	0	0	0	0	1	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0019	873	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0020	873	1	1	0	0	0	0	copy fasta	PIWIL3	chr22	24714034	24779720
PIWIL3_chr22_24714034_24779720	0/0	a0021	873	1	0	0	0	0	1	copy fasta	PIWIL3	chr22	24714034	24779720