JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLA2G4F_chr15_42134034_42161636	0/0	a0003	849	43	8	11	22	0	2	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	1/1	a0004	849	38	5	9	14	5	3	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0005	849	26	0	1	25	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0006	849	14	0	6	1	2	5	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0007	849	10	2	2	6	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0008	849	4	0	1	0	0	3	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0009	849	3	1	0	0	0	2	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0010	849	2	2	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0011	849	2	2	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0012	849	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0013	849	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0014	849	1	0	0	0	1	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0015	849	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0016	779	1	0	0	0	0	1	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0017	849	1	0	0	0	0	1	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0018	849	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0019	849	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0020	849	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0021	849	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0022	849	1	0	0	0	1	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0023	849	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0024	849	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0025	849	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0026	849	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0027	849	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0028	849	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0029	849	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0030	849	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0031	849	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G5_chr1_20065194_20096911	1/1	a0001	138	429	95	78	192	16	46	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	a0002	138	1	1	0	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G6_chr22_38106495_38186830	1/1	a0001	806	10	2	4	0	0	2	copy fasta	PLA2G6	chr22	38106495	38186830
PLA2G7_chr6_46699201_46740375	0/0	a0001	441	137	31	29	59	4	14	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	a0002	441	129	20	28	52	3	26	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	1/1	a0003	441	52	7	17	20	3	3	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	a0004	441	29	0	0	29	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	a0005	441	23	7	2	7	4	3	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	a0006	441	14	14	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	a0007	441	4	4	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	a0008	441	2	0	2	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	a0009	441	1	1	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	a0010	441	1	0	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2R1_chr2_159927006_160067615	1/0	a0001	1463	193	51	27	81	6	27	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0002	1463	62	2	16	39	3	2	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0003	1463	21	0	4	16	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0004	686	11	9	2	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0005	1463	10	0	1	8	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/1	a0006	1463	9	0	4	0	0	4	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0007	1463	4	4	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0008	1463	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615