JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLA2R1_chr2_159927006_160067615	0/0	a0009	1463	2	0	0	2	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0010	1463	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0011	1463	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0012	1463	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0013	1463	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0014	1222	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0015	1463	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0016	1463	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0017	1463	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0018	1463	1	0	0	0	1	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	a0019	1463	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLAAT1_chr3_193236222_193275855	1/1	a0001	168	395	85	74	182	8	44	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	a0002	168	1	1	0	0	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	a0003	168	1	0	0	1	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	a0004	168	1	0	0	1	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT2_chr11_63547770_63568379	1/1	a0001	162	372	90	80	148	14	38	copy fasta	PLAAT2	chr11	63547770	63568379
PLAAT2_chr11_63547770_63568379	0/0	a0002	162	4	4	0	0	0	0	copy fasta	PLAAT2	chr11	63547770	63568379
PLAAT2_chr11_63547770_63568379	0/0	a0003	162	2	2	0	0	0	0	copy fasta	PLAAT2	chr11	63547770	63568379
PLAAT3_chr11_63569462_63619433	1/1	a0001	162	349	93	62	140	16	36	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	a0002	162	2	0	0	0	0	2	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	a0003	162	1	1	0	0	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT4_chr11_63531808_63551458	1/1	a0001	164	321	90	71	112	16	30	copy fasta	PLAAT4	chr11	63531808	63551458
PLAAT4_chr11_63531808_63551458	0/0	a0002	164	1	0	1	0	0	0	copy fasta	PLAAT4	chr11	63531808	63551458
PLAAT5_chr11_63456404_63496167	0/1	a0001	269	236	20	47	116	11	41	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0002	269	90	50	5	31	1	3	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0003	269	8	8	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0004	269	7	7	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0005	269	7	7	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0006	269	2	0	2	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0007	269	2	2	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0008	269	1	0	1	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0009	269	1	0	1	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0010	269	1	0	0	1	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0011	269	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	1/0	a0012	269	1	0	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	a0013	269	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAA_chr9_26898372_26952242	1/1	a0001	795	372	89	73	140	18	50	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	a0002	795	1	1	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	a0003	795	1	0	1	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAC1_chrX_134560838_134663471	1/1	a0001	212	251	66	53	89	11	30	copy fasta	PLAC1	chrX	134560838	134663471
PLAC1_chrX_134560838_134663471	0/0	a0002	142	1	0	0	1	0	0	copy fasta	PLAC1	chrX	134560838	134663471
PLAC8L1_chr5_146079313_146110577	1/0	a0001	177	272	86	44	108	5	28	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/1	a0002	177	89	0	22	50	3	13	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	a0003	177	5	5	0	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	a0004	177	1	0	0	0	0	1	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	a0005	177	1	1	0	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8_chr4_83085048_83119729	1/1	a0001	115	407	91	70	182	18	44	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	a0002	115	1	1	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC9_chr10_80127730_80150359	1/1	a0001	97	460	92	83	220	15	48	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	a0002	98	3	1	0	0	1	1	copy fasta	PLAC9	chr10	80127730	80150359