JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POLI_chr18_54264517_54303234	0/0	a0011	740	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0012	739	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0013	739	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0014	739	1	0	1	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0015	739	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	a0016	739	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLK_chr5_75506891_75614991	1/1	a0001	870	345	87	59	157	8	32	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	a0002	870	4	0	0	4	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	a0003	870	2	0	0	0	0	2	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	a0004	870	2	0	0	2	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	a0005	870	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	a0006	870	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	a0007	870	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLL_chr10_101573882_101593257	1/0	a0001	575	330	65	54	159	9	42	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	a0002	575	38	6	15	7	7	3	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/1	a0003	575	21	15	2	1	2	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	a0004	575	1	0	0	1	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	a0005	575	1	0	0	1	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	a0006	575	1	0	0	0	0	1	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	a0007	405	1	0	0	1	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	a0008	575	1	0	1	0	0	0	copy fasta	POLL	chr10	101573882	101593257
POLM_chr7_44067062_44087530	1/1	a0001	494	387	90	77	162	14	42	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	a0002	494	2	0	0	2	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	a0003	494	1	1	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	a0004	494	1	1	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	a0005	494	1	0	0	1	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	a0006	490	1	0	1	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	a0007	494	1	0	0	1	0	0	copy fasta	POLM	chr7	44067062	44087530
POLN_chr4_2066918_2247121	0/0	a0001	900	89	30	18	36	1	4	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	1/0	a0002	900	87	30	15	36	0	5	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/1	a0003	900	4	1	2	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	a0004	900	3	3	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	a0005	900	3	3	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	a0006	900	3	3	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	a0007	900	1	0	1	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	a0008	900	1	1	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	a0009	900	1	0	0	0	1	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	a0010	900	1	1	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	a0011	900	1	0	0	0	0	1	copy fasta	POLN	chr4	2066918	2247121
POLQ_chr3_121426431_121550988	0/0	a0001	2590	99	21	23	39	5	11	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0002	2590	54	13	14	20	5	2	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0003	2590	50	9	3	28	1	9	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0004	2590	16	10	4	0	2	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0005	2590	14	0	4	9	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0006	2590	11	2	7	0	1	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0007	2590	7	0	0	6	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0008	2590	6	6	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0009	2590	4	3	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0010	2590	4	4	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	a0011	2590	4	0	0	4	0	0	copy fasta	POLQ	chr3	121426431	121550988