JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
POTEJ_chr2_130606440_130663037	0/0	a0027	1038	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0028	1038	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0029	1038	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0030	1038	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0031	1038	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0032	1038	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	a0033	1075	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEM_chr14_18962434_19008752	0/0	a0001	508	24	3	4	14	0	3	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	1/0	a0002	508	6	0	5	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0003	508	5	0	1	4	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0004	508	4	0	0	3	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0005	508	3	0	0	3	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0006	508	3	1	1	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0007	508	3	0	0	3	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0008	508	2	0	0	0	0	2	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0009	508	2	0	0	2	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0010	508	2	0	1	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0011	508	2	2	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0012	508	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0013	508	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0014	508	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0015	508	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0016	508	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0017	508	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0018	508	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0019	508	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0020	508	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0021	508	1	1	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	a0022	508	1	1	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POU1F1_chr3_87254404_87281584	1/1	a0001	291	418	92	75	195	12	42	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	a0002	291	1	0	0	1	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	a0003	291	1	0	1	0	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU2AF1_chr11_111347255_111384275	1/1	a0001	256	379	88	67	180	14	28	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	a0002	256	3	3	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	a0003	236	1	0	1	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	a0004	256	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF2_chr11_111240725_111291401	1/1	a0001	288	362	77	63	177	12	31	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	a0002	288	15	12	3	0	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	a0003	288	1	0	0	0	0	1	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	a0004	288	1	1	0	0	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	a0005	288	1	0	0	1	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF3_chr11_111293546_111313735	1/1	a0001	251	461	96	77	230	14	42	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	a0002	251	3	0	3	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	a0003	251	2	2	0	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	a0004	251	1	0	1	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	a0005	251	1	0	1	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2F1_chr1_167215886_167432340	1/1	a0001	766	291	86	44	115	16	28	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	a0002	766	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F2_chr19_42081110_42137446	1/0	a0001	624	175	66	30	42	2	34	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/1	a0002	624	1	0	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446